PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6062.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 222aa    MW: 23818.3 Da    PI: 6.7123
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6062.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.16.7e-12106153350
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                  e +r rr+ +NRe+ArrsR RK+ ++ eL   v+ L + N++L +el+
  MLOC_6062.2 106 EERRRRRMVSNRESARRSRMRKQRQLSELWAQVAHLRGANRRLLDELN 153
                  67899***************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-8104182IPR004827Basic-leucine zipper domain
PfamPF001702.2E-9105153IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.22106153IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.2E-7108181No hitNo description
SuperFamilySSF579591.22E-10108156No hitNo description
PROSITE patternPS000360111126IPR004827Basic-leucine zipper domain
CDDcd147025.31E-15113157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MYHYNNGDVA SFHFLPPPSP SSSFATHHHM NMTLPPQAYF PPSFDPAALL ADDDDVAAAF  60
QFDAILVEEA AHLAGGSGSP SSGSDAGGGN YFQVGGAGPG VGSAEEERRR RRMVSNRESA  120
RRSRMRKQRQ LSELWAQVAH LRGANRRLLD ELNCALRGCA DACRESAQLR DEKAKLNEML  180
EQLLQQSAPE KKAASSPASS NHSSCSSEPC KNSTAAAASS TE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120127RRSRMRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00533DAPTransfer from AT5G38800Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6062.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043767e-65AP004376.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0481F05.
GenBankAP0045577e-65AP004557.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0028A08.
GenBankAP0149647e-65AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126167e-65CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
GenBankCT8315047e-65CT831504.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA115A07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148525.11e-107basic leucine zipper 25-like
TrEMBLM0XJG41e-161M0XJG4_HORVV; Uncharacterized protein
STRINGMLOC_6062.21e-162(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118635126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.13e-13basic leucine-zipper 43