PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_60897.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family YABBY
Protein Properties Length: 251aa    MW: 26755.4 Da    PI: 8.0257
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_60897.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY219.97.3e-68202105170
         YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee....................lleelkveeen 81 
                   s +eq+Cyv+Cn C+tilav vP +slfk+vtvrCGhC++llsvnl+      aa    + ++ ++                    ll ++ +++ +
  MLOC_60897.1  20 SPTEQLCYVHCNCCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRALLLPPAAPPANQLQFGHSllsptsphglldevafqtpsLLMDQASTNLS 116
                   578********************************************99965555555455555445556899997666665444322222222211 PP

         YABBY  82 lksnvekeesastsvssekl...........senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167
                     +  +++++as+      l           +++++++++ +p ++rPPekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+ih
  MLOC_60897.1 117 GFTGRSNSSCASN------LpampmpaakpaQQETEQSAKSAPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIH 207
                   1122222233333......1233447888744555555556677***************************************************** PP

         YABBY 168 fgl 170
                   fgl
  MLOC_60897.1 208 FGL 210
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.9E-7121210IPR006780YABBY protein
SuperFamilySSF470951.17E-7153203IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.1E-4159202IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0009933Biological Processmeristem structural organization
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010093Biological Processspecification of floral organ identity
GO:0010154Biological Processfruit development
GO:0010158Biological Processabaxial cell fate specification
GO:0010159Biological Processspecification of organ position
GO:0010450Biological Processinflorescence meristem growth
GO:1902183Biological Processregulation of shoot apical meristem development
GO:2000024Biological Processregulation of leaf development
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSSSSSSSSA VFNLDHLAPS PTEQLCYVHC NCCDTILAVG VPCSSLFKTV TVRCGHCANL  60
LSVNLRALLL PPAAPPANQL QFGHSLLSPT SPHGLLDEVA FQTPSLLMDQ ASTNLSGFTG  120
RSNSSCASNL PAMPMPAAKP AQQETEQSAK SAPSANRPPE KRQRVPSAYN RFIKDEIQRI  180
KAGNPDITHR EAFSAAAKNW AHFPHIHFGL MPDQGFKRTF KAQDGAEEML LKDGLYAAAA  240
AAAANMSVTP L
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00620PBMTransfer from AT2G45190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_60897.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2740160.0AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBankAK1067840.0AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020155221.10.0protein YABBY 4-like isoform X2
SwissprotA2X7Q31e-126YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-126YAB4_ORYSJ; Protein YABBY 4
TrEMBLM0XKN90.0M0XKN9_HORVV; Uncharacterized protein
STRINGMLOC_60897.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45190.18e-60YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]