PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_60907.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

Dof

Protein Properties

Length: 231aa MW: 23864.8 Da PI: 9.8931

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_60907.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.1e-39	61	122	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss MLOC_60907.2 61 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 122 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	54	109	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	63	119	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.901	65	119	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	67	103	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MEEMIMAGNP NPNPNGNPSP QPAPPSGAEA QRAPLPGQPA AGAGAAAGTG STERKAARPQ 60 KEKAINCPRC NSTNTKFCYY NNYSLQQPRY FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS 120 SSSVVSSAAG AVSTSGAASG TVPVGGMPAK NPKLMHEGAH DLNLAFPHHH GRVLHPSEFA 180 AFPSLESSSV CNPGGAMAAN GVGGGRGMGT FSAMELLRST GCYVPLPQVQ L

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_60907.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363473	0.0	AK363473.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2015M18.
GenBank	AK364865	0.0	AK364865.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028O15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164856.1	1e-100	dof zinc finger protein DOF4.6-like isoform X1
Refseq	XP_020164857.1	1e-100	dof zinc finger protein DOF1.8-like isoform X2
Refseq	XP_020164858.1	1e-100	dof zinc finger protein DOF1.8-like isoform X2
Refseq	XP_020164859.1	1e-100	dof zinc finger protein DOF1.8-like isoform X2
Swissprot	B9F1L8	1e-81	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	A0A287UGC0	1e-166	A0A287UGC0_HORVV; Predicted protein
TrEMBL	F2DLU7	1e-166	F2DLU7_HORVV; Predicted protein
STRING	MLOC_60907.1	1e-166	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-31	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]