PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6114.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 256aa    MW: 27674.8 Da    PI: 7.545
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6114.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.94.8e-2449110259
                  --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                  +Dg++WrKYGqK+++g+ fpr YYrCt++   gC++ k+ve+  + dp ++ ++Y+++H+++
  MLOC_6114.1  49 HDGFQWRKYGQKVIRGNAFPRCYYRCTYHqdhGCSASKHVEQHnSADPPLFRVVYTNDHTCS 110
                  7***************************98999*******986157**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-2433110IPR003657WRKY domain
SuperFamilySSF1182908.37E-2241110IPR003657WRKY domain
SMARTSM007744.4E-3448111IPR003657WRKY domain
PROSITE profilePS5081119.65750107IPR003657WRKY domain
PfamPF031066.0E-2450109IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MRGSSMLSSI GSNKRMLQQD CSGGSHAQEH TKKKARVGMR TDYTYAPYHD GFQWRKYGQK  60
VIRGNAFPRC YYRCTYHQDH GCSASKHVEQ HNSADPPLFR VVYTNDHTCS GAAAAASDYM  120
ASSMHIQQIA DASLRKADTE PERPPRPQQP RSGGGCAAAI KEEKDVIVSS LLAVIRGSCD  180
VAKSDAAHQG YSSASSLASA NCYAMSPSVA GGSREGSSSS SVSPAVLPAP DDMGLGLDFM  240
VESHWFEPLD LGWFVE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6114.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8063910.0JQ806391.1 Hordeum vulgare WRKY transcript factor 53 (WRKY53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186013.11e-152probable WRKY transcription factor 63
TrEMBLM0XLM50.0M0XLM5_HORVV; Uncharacterized protein
STRINGMLOC_6114.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118143139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-18WRKY DNA-binding protein 55