PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61146.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family G2-like
Protein Properties Length: 336aa    MW: 36605.6 Da    PI: 8.2377
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61146.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.88.9e-32213268156
       G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                   k+r++W+peLH++Fv a++qLGG+++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+
  MLOC_61146.1 213 KTRRCWSPELHRHFVAALHQLGGPQVATPKQIREVMKVDGLTNDEVKSHLQKYRLH 268
                   68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.772210270IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-28210271IPR009057Homeodomain-like
SuperFamilySSF466891.79E-16211270IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-25213268IPR006447Myb domain, plants
PfamPF002491.1E-6215266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGLDVGEIGM PLDLGLDLKL FVAKTAGRLA AAAKEPPAVD ACIRGLEEER RKIEVFRREL  60
PLCARLLADV IEFMKEEAAK RSERRDADDN DKRKWMSTAQ LWVDSRAADP LKEQKKESAL  120
SKPMLLGGAT GAPMAVSCGA MPPPPAPQYF GRDDKIVGAE GLPALPMMSP AANRQFSPPA  180
DDRHQAFAAK FAAAMPPPPS GPGLQAHDQQ SRKTRRCWSP ELHRHFVAAL HQLGGPQVAT  240
PKQIREVMKV DGLTNDEVKS HLQKYRLHNQ RSPSSSSASH PIMLVGDLWA HQEQSSSQSR  300
SPEGPLQLSC SGVAVSALTV SDSSEEDDRS VGYSRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-13213271260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-13213271260Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A1e-13213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-13213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-13213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-13213266154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-13213271260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-13213271260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-13213271260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-13213271260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-13213271260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-13213271260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61146.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3592040.0AK359204.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1091O11.
GenBankAK3672830.0AK367283.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2054A04.
GenBankAK3688590.0AK368859.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2081E17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199780.10.0uncharacterized protein LOC109785601
TrEMBLF2D5P40.0F2D5P4_HORVV; Predicted protein
STRINGTraes_5BL_1AE458202.20.0(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.14e-40G2-like family protein