PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61270.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 332aa    MW: 36420.9 Da    PI: 6.4053
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61270.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1614.7e-50111381128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                   lppGfrFhPtdeelv++yL++k+ g ++ +  vi+evd+yk+ePw+Lp+k+++   ++kewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v s
  MLOC_61270.3  11 LPPGFRFHPTDEELVMYYLCRKCGGLPIAA-PVIAEVDLYKLEPWRLPEKAAGggqDSKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPVGS 106
                   79*************************999.89***************64433333556************************************99 PP

           NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + v +kk Lvfy g+ pkg+kt+W+mheyrl
  MLOC_61270.3 107 --PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 138
                   ..779***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-598168IPR003441NAC domain
PROSITE profilePS5100558.8111168IPR003441NAC domain
PfamPF023658.5E-2612138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDHGFDGALQ LPPGFRFHPT DEELVMYYLC RKCGGLPIAA PVIAEVDLYK LEPWRLPEKA  60
AGGGQDSKEW YFFSPRDRKY PNGSRPNRAA GTGYWKATGA DKPVGSPRPV AIKKALVFYA  120
GKPPKGVKTN WIMHEYRLAD VDRSAAARKK SNNALRLDDW VLCRIYNKKG VIERYDTVES  180
DVADVKPAPA PAAKNPRQGH YAPGPAMKVE LSDYGFYQQP SPPATEMLCF DRSGSADRDS  240
NHSMPRLHTD SSSSERALSS PSPDFPSDMD YAESQHAAGL AGGWPGDDWG GVIDDDGFVI  300
DGSLIFDPPS PGAFARDAAA FGDMLTYLQK PF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-72617410174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61270.3
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3572070.0AK357207.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048E22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163238.10.0NAC domain-containing protein 71-like
SwissprotQ53NF71e-161NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLF2D0000.0F2D000_HORVV; NAC transcription factor
STRINGMLOC_61270.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.19e-93NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]