PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61416.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ZF-HD
Protein Properties Length: 274aa    MW: 28233.3 Da    PI: 6.5869
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61416.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.56.4e-33120174358
   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                   +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e +
  MLOC_61416.1 120 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKELD 174
                   689*************************9.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-29121172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-24122174IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.8E-31122172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.735123172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVSIVQLQRR RTEAAAAEPP ARSFLPDREE GERMDLSVPR GEFPIPMHAA AASPYGGGIG  60
GGGVAVADHA MDLHHDHANH NGQSQPQAQD MASPPAAVSE DSSGKKRAAA IAGGGGGGPA  120
VKYRECLKNH AAAIGGNATD GCGEFMPSGE EGSLEALKCS ACGCHRNFHR KELDDLDGDS  180
CASHGYGYGH HAVRRLLGPA VSHSHHHKSS GGLLVTADHY GAYAAARALP PPPPPLPGHH  240
HQIIMPLNMI QTSESDEMDG IMGDGRGGLA SGGG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61416.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3615790.0AK361579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1144B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179853.11e-138zinc-finger homeodomain protein 4-like isoform X1
SwissprotQ53N874e-61ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A287NCE40.0A0A287NCE4_HORVV; Uncharacterized protein
STRINGMLOC_61416.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-29homeobox protein 31