PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61416.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ZF-HD
Protein Properties Length: 241aa    MW: 24484.1 Da    PI: 6.5853
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61416.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.95.2e-3387141358
   ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                   +v+Y+eClkNhAa++Gg+a+DGCgEfmps geeg+ +alkC+ACgCHRnFHR+e +
  MLOC_61416.2  87 AVKYRECLKNHAAAIGGNATDGCGEFMPS-GEEGSLEALKCSACGCHRNFHRKELD 141
                   689*************************9.999********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.1E-2988139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.5E-3189139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2489141IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.73590139IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MDLSVPRGEF PIPMHAAAAS PYGGGIGGGG VAVADHAMDL HHDHANHNGQ SQPQAQDMAS  60
PPAAVSEDSS GKKRAAAIAG GGGGGPAVKY RECLKNHAAA IGGNATDGCG EFMPSGEEGS  120
LEALKCSACG CHRNFHRKEL DDLDGDSCAS HGYGYGHHAV RRLLGPAVSH SHHHKSSGGL  180
LVTADHYGAY AAARALPPPP PPLPGHHHQI IMPLNMIQTS ESDEMDGIMG DGRGGLASGG  240
G
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61416.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3615790.0AK361579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1144B18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179853.11e-123zinc-finger homeodomain protein 4-like isoform X1
SwissprotQ53N875e-60ZHD4_ORYSJ; Zinc-finger homeodomain protein 4
TrEMBLA0A287NCC91e-170A0A287NCC9_HORVV; Uncharacterized protein
TrEMBLA0A287NCE41e-170A0A287NCE4_HORVV; Uncharacterized protein
STRINGMLOC_61416.11e-172(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-29homeobox protein 31