PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_61490.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

bZIP

Protein Properties

Length: 219aa MW: 24036.8 Da PI: 9.9036

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_61490.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46	1.2e-14	149	191	5	47
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 +r +r++kNRe+A rsR+RK+a++ eLe+k+ Le+eN++L++ MLOC_61490.1 149 RRKKRMIKNRESAARSRARKQAYTNELENKISRLEEENQQLRS 191 6899*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.5E-12	145	217	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.3	147	191	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.0E-11	149	191	No hit	No description
CDD	cd14707	4.66E-20	149	190	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.4E-14	149	191	No hit	No description
Pfam	PF00170	1.6E-12	149	191	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	152	167	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MGTQAMPSGG AISRQGSLCS LTLSDVEGQL HGVNLDDLLR TAGSARKTAD EVWRDIQGGT 60 QMTLEDYLSR PGADAGGAHW AEQYNPAAPV PGQQRHTNVG RPLPRPLGVG AGPVLDALYH 120 DHDHDHDGAT MSGRKRAAAG GPGEKTVERR KKRMIKNRES AARSRARKQA YTNELENKIS 180 RLEEENQQLR SYKAFEPVVH CVPQQEPKNQ LRRRNSASF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	151	RKRAAAGGPGEKTVERRKK
2	133	152	RKRAAAGGPGEKTVERRKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_61490.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361423	0.0	AK361423.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1140E18.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198083.1	1e-143	ABSCISIC ACID-INSENSITIVE 5-like protein 2
Swissprot	Q9LES3	5e-37	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	F2DC08	1e-161	F2DC08_HORVV; Predicted protein
STRING	MLOC_61490.1	1e-162	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4441	33	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	3e-40	ABA-responsive element binding protein 3

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]