PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61696.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CPP
Protein Properties Length: 318aa    MW: 35911.6 Da    PI: 8.453
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61696.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR45.61.4e-142259340
           TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                  +k+C Ckks+Clk+YC Cfa g +Cse+C C  C+Nk 
  MLOC_61696.1 22 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCVPCFNKA 59
                  89**********************************97 PP
2TCR50.54.2e-16107143339
           TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                   ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedCkN 
  MLOC_61696.1 107 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCKNP 143
                   589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.4E-142061IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163429.97621145IPR005172CRC domain
PfamPF036383.6E-102358IPR005172CRC domain
SMARTSM011143.3E-15105146IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.2E-11108142IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MNQLALATTP KRQKVEDAAD GCKHCACKKS RCLKLYCPCF AGGGYCSEKC GCVPCFNKAD  60
FAETVQTTRK VLLSRQKRMS LKINRRLEAN AETMEDAHNS SSSTPPRRGC NCKKSSCLKK  120
YCDCYQDGTG CSLFCRCEDC KNPFGKNEGI MADESKRFLY TGADLDHSED EHDFIVERSP  180
RLQSPISKES SFQHTPPRSK ASSRDTHLLP QVLSQWQPRS WQQQSSKRQA NDHHRAVDDS  240
GENRGSNHEW QLAKHQAPED AYSISRCVQI LNGMVEMSQV EKSVAPDVFL QPGNREIFVS  300
LGVDVRALWL KRKIQHLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A6e-122314212120Protein lin-54 homolog
5fd3_B6e-122314212120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61696.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678660.0AK367866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2063M24.
GenBankAK3745570.0AK374557.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157750.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A287GCS90.0A0A287GCS9_HORVV; Uncharacterized protein
STRINGMLOC_61696.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.11e-42TESMIN/TSO1-like CXC 2