PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61696.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CPP
Protein Properties Length: 125aa    MW: 14155 Da    PI: 6.9505
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61696.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR52.68.8e-173167339
           TCR  3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39
                  ++gCnCkks+ClkkYC+C+++g+ Cs  C+CedCkN 
  MLOC_61696.2 31 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCEDCKNP 67
                  589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163418.033169IPR005172CRC domain
SMARTSM011143.3E-152970IPR033467Tesmin/TSO1-like CXC domain
PfamPF036384.9E-123266IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
NYLWLVIIVS ILCLCHLQED AHNSSSSTPP RRGCNCKKSS CLKKYCDCYQ DGTGCSLFCR  60
CEDCKNPFGK NEGIMADESK RFLYTGADLD HSEDEHDFIV ERSPRLQSPI SKESSFQHTP  120
PRSKA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61696.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3678661e-180AK367866.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2063M24.
GenBankAK3745571e-180AK374557.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3069A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157750.15e-71protein tesmin/TSO1-like CXC 3
TrEMBLA0A446J7K82e-83A0A446J7K8_TRITD; Uncharacterized protein
STRINGTraes_1AL_F16BCEC90.23e-82(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.19e-21Tesmin/TSO1-like CXC domain-containing protein