PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_61712.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HB-other
Protein Properties Length: 163aa    MW: 17969.1 Da    PI: 9.9991
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_61712.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.4e-091375656
                  S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
      Homeobox  6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                  +ft+ ++ e+ee+ +   n  p+++ ++ LA+k            ++ +qV +WFqNrR+ ++
  MLOC_61712.3 13 RFTHAEVAEMEEHLRHlnNAIPQRSVIQGLAEKFtasasrtgkiPVQYKQVWNWFQNRRYSQR 75
                  6999********999555999*********************99999*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-71277IPR009057Homeodomain-like
SuperFamilySSF466892.35E-111277IPR009057Homeodomain-like
CDDcd000863.38E-41375No hitNo description
PROSITE profilePS500719.6691377IPR001356Homeobox domain
PfamPF000461.9E-61375IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGRPPSSGGP AFRFTHAEVA EMEEHLRHLN NAIPQRSVIQ GLAEKFTASA SRTGKIPVQY  60
KQVWNWFQNR RYSQRARTPR GAPPPQGKML PTGAEEHHPA SFRAQGSSSS YPGSHSGKSA  120
SDGGMAEFEA KSARDGAWYD VAAFLSHRLF ETGDPVMAIY FFC
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_61712.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2529430.0AK252943.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf178n11, mRNA sequence.
GenBankAK3635050.0AK363505.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2016B04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157952.14e-97protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_020157953.14e-97protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_020157955.15e-97protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-43SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLF2DHY72e-99F2DHY7_HORVV; Predicted protein
STRINGMLOC_61712.11e-100(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-42sequence-specific DNA binding transcription factors;sequence-specific DNA binding