PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62068.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bZIP
Protein Properties Length: 66aa    MW: 7376.12 Da    PI: 10.2977
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62068.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.72.2e-074465425
                  XCHHHCHHHHHHHHHHHHHHHH CS
        bZIP_1  4 lkrerrkqkNReAArrsRqRKk 25
                   k  rr+++NReAAr+sR+RKk
  MLOC_62068.2 44 QKTMRRLAQNREAARKSRLRKK 65
                  57889****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.6E-43765No hitNo description
PROSITE patternPS0003604863IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 66 aa     Download sequence    Send to blast
MAEASPRTET SDDTDENLML EPGNAALAVA SDSSDRSRDR NGDQKTMRRL AQNREAARKS  60
RLRKKV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62068.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2514601e-105AK251460.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf125e16, mRNA sequence.
GenBankAK3572391e-105AK357239.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1048N17.
GenBankAK3593911e-105AK359391.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1095N07.
GenBankAK3629491e-105AK362949.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2011J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164500.15e-34transcription factor HBP-1b(c38) isoform X1
RefseqXP_020164501.15e-34transcription factor HBP-1b(c38) isoform X1
SwissprotP239234e-35HBP1B_WHEAT; Transcription factor HBP-1b(c38)
TrEMBLF2DGD24e-36F2DGD2_HORVV; Predicted protein
STRINGEMT213262e-34(Aegilops tauschii)
STRINGTRIUR3_28255-P16e-35(Triticum urartu)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06960.28e-14OCS-element binding factor 5
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]