PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_62426.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

SBP

Protein Properties

Length: 182aa MW: 20012.9 Da PI: 10.8187

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_62426.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.8	1e-40	57	134	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC ++l+ akeyhr+h+vCe+h+k+p v+v+g+e+rfCqqCsrfh lsefD++krsCrrrL++hn+rrrk+q+ MLOC_62426.2 57 RCQVEGCGTELAAAKEYHRKHRVCEAHTKSPRVVVAGQERRFCQQCSRFHGLSEFDQKKRSCRRRLSDHNARRRKPQP 134 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.2E-34	51	119	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.761	55	132	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.06E-39	56	137	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.9E-31	58	131	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MEWTAPKSTP SSPPHLLWDW GDAAALGSSG EAAGRRGKEK RARGEGAGGG GGGGGVRCQV 60 EGCGTELAAA KEYHRKHRVC EAHTKSPRVV VAGQERRFCQ QCSRFHGLSE FDQKKRSCRR 120 RLSDHNARRR KPQPDAFSFA PARLPSSLMF GNLSILLVGN YARFVLFFLT LLIALKLLLF 180 YA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-28	49	131	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	130	KKRSCRRRLSDHNARRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_62426.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305\|PubMed:16861571}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK361610	0.0	AK361610.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1144O20.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020186598.1	2e-83	squamosa promoter-binding-like protein 4
Swissprot	Q6H509	1e-61	SPL4_ORYSJ; Squamosa promoter-binding-like protein 4
TrEMBL	M0XRS8	1e-130	M0XRS8_HORVV; Uncharacterized protein
STRING	MLOC_62426.1	1e-104	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	4e-40	squamosa promoter binding protein-like 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]