PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62522.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 166aa    MW: 17754.2 Da    PI: 9.0248
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62522.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA22.22e-0780952035
          GATA 20 ktLCnaCGlyyrkkgl 35
                   +LCnaCG++++k+++
  MLOC_62522.1 80 QSLCNACGIRFKKEER 95
                  46***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.103.0E-48095IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MVAGAAPPGT SSSWTAAAPT AAPRPPRSGG TAPADPRYTH THTHTFKLAH AHFVSAFFNL  60
LQCNCIRLIY VAMYAHCLPQ SLCNACGIRF KKEERRAAET NGGGGCGYVA QRAPMSAPRA  120
VPYAEEALPY AGAVDAPFLA WRLNGVPPAP AFSAWPDRQH GVYQYN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62522.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ4211140.0JQ421114.1 Hordeum vulgare isolate trd1.12 TRD1 gene, complete cds.
GenBankJQ4211150.0JQ421115.1 Hordeum vulgare isolate Bowman TRD1 gene, complete cds.
GenBankJQ4211160.0JQ421116.1 Hordeum vulgare isolate Bonus TRD1 gene, complete cds.
GenBankJQ4211170.0JQ421117.1 Hordeum vulgare isolate Foma TRD1 gene, complete cds.
GenBankJQ4211180.0JQ421118.1 Hordeum vulgare isolate Kristina TRD1 gene, complete cds.
GenBankJQ4211190.0JQ421119.1 Hordeum vulgare isolate Valki TRD1 gene, complete cds.
GenBankJQ4211220.0JQ421122.1 Hordeum vulgare isolate trd005 TRD1 gene, complete cds.
GenBankJQ4211230.0JQ421123.1 Hordeum vulgare isolate trd006 TRD1 gene, complete cds.
GenBankJQ4211240.0JQ421124.1 Hordeum vulgare isolate trd007 TRD1 gene, complete cds.
GenBankJQ4211250.0JQ421125.1 Hordeum vulgare isolate trd008 TRD1 gene, complete cds.
GenBankJQ4211260.0JQ421126.1 Hordeum vulgare isolate trd009 TRD1 gene, complete cds.
GenBankJQ4211270.0JQ421127.1 Hordeum vulgare isolate trd0010 TRD1 gene, complete cds.
GenBankJQ4211280.0JQ421128.1 Hordeum vulgare isolate trd0011 TRD1 gene, complete cds.
GenBankJQ4211290.0JQ421129.1 Hordeum vulgare isolate trd14 TRD1 gene, complete cds.
GenBankJQ4211300.0JQ421130.1 Hordeum vulgare isolate trd-a.001 TRD1 gene, complete cds.
GenBankJQ4211310.0JQ421131.1 Hordeum vulgare isolate trd-a.003 TRD1 gene, complete cds.
GenBankJQ4211320.0JQ421132.1 Hordeum vulgare isolate trd-b.004 TRD1 gene, complete cds.
GenBankJQ4211330.0JQ421133.1 Hordeum vulgare isolate trd-b.002 TRD1 gene, complete cds.
GenBankJQ4211340.0JQ421134.1 Hordeum vulgare isolate BW067 TRD1 gene, complete cds.
GenBankJQ4211350.0JQ421135.1 Hordeum vulgare isolate BW068 TRD1 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154840.13e-53GATA transcription factor 19-like
SwissprotQ6L5E52e-14GAT15_ORYSJ; GATA transcription factor 15
TrEMBLI3V5R39e-56I3V5R3_HORVU; TRD1
TrEMBLI3V5R41e-55I3V5R4_HORVU; TRD1
STRINGMLOC_62522.22e-56(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.12e-08GATA transcription factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]