PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62522.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GATA
Protein Properties Length: 217aa    MW: 23083.7 Da    PI: 8.4699
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62522.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.52.4e-20112146135
          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                   C+nCgt +TplWR+gp+g+k+LCnaCG++++k+++
  MLOC_62522.2 112 CANCGTASTPLWRNGPRGPKSLCNACGIRFKKEER 146
                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.864106142IPR000679Zinc finger, GATA-type
SMARTSM004014.7E-18106156IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.43E-13108146No hitNo description
Gene3DG3DSA:3.30.50.102.5E-17110146IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.05E-15111143No hitNo description
PROSITE patternPS003440112137IPR000679Zinc finger, GATA-type
PfamPF003205.4E-18112146IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MATSTFSLFF PPLPSSKGQW PVAEEAAYSY DDHSTVTTLS PSSPASSASS GSLVDCTLSL  60
GMPSSRRPQP DRRPPPQAYP SVSAAAEPCY YHQQHGGRGG AAGHEQLLDR RCANCGTAST  120
PLWRNGPRGP KSLCNACGIR FKKEERRAAE TNGGGGCGYV AQRAPMSAPR AVPYAEEALP  180
YAGAVDAPFL AWRLNGVPPA PAFSAWPDRQ HGVYQYN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269|PubMed:19337211}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00472DAPTransfer from AT4G36620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62522.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7222060.0GU722206.1 Hordeum vulgare subsp. vulgare cultivar Bowman third outer glume (TRD) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154840.11e-133GATA transcription factor 19-like
SwissprotQ6L5E51e-47GAT15_ORYSJ; GATA transcription factor 15
TrEMBLD4PAP21e-156D4PAP2_HORVV; Third outer glume
TrEMBLI3V5T41e-156I3V5T4_HORVU; TRD1
STRINGMLOC_62522.21e-157(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36620.13e-24GATA transcription factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Houston K, et al.
    Analysis of the barley bract suppression gene Trd1.
    Theor. Appl. Genet., 2012. 125(1): p. 33-45
    [PMID:22395962]