PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_62571.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

HB-other

Protein Properties

Length: 544aa MW: 61674.5 Da PI: 9.2169

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_62571.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.2e-18	47	101	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++ql++Le+ + ++yps+++r+eL+ k+gL++rq ++WF+ rR k++k MLOC_62571.1 47 KRMMKTPYQLDVLEQTYLAEQYPSEAMRAELSVKIGLSDRQLQMWFCHRRLKDRK 101 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-17	26	101	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-17	29	101	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.613	42	102	IPR001356	Homeobox domain
SMART	SM00389	1.9E-16	44	106	IPR001356	Homeobox domain
CDD	cd00086	2.57E-13	47	102	No hit	No description
Pfam	PF00046	6.9E-16	47	101	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MDAGGGGDGP PREAPEERTP QTPAPPAPAS ASGGAAGPSG SGEKPVKRMM KTPYQLDVLE 60 QTYLAEQYPS EAMRAELSVK IGLSDRQLQM WFCHRRLKDR KPPAKRQRRD EEGPATPVPV 120 PPPVLPLQAM PLASTDLMMS AVSPYDEPLL PPTHSRRGAG RSSAVPRISA PDIGRRYYEP 180 LPVMLPPPVA PMHFRQAELR VITSVESQLG EPLREDGPLL GVDFDPLPPG AFGAPIVPEQ 240 QKQPARSYDT KIFSRHDPNL LKVSSFLPSM EHPFVPNSFA GKRKSTVGNP PLVHPHGGLR 300 AVHEYQFLPE QPSDAYERAS RSHYYDTLVE GSNSRIPSLT PVPHLLHGSE EMAPSYAFEG 360 QGLLPQSGRP QVFPAVSSDY EMNQSNSNIN SVPVDGQFGS SHVAGFEDPL ISSETRAYHD 420 EDASRVDRKR KHNEEAKIAK EVEAHEKRIR KELEKQDILR RKREEQMRKE MERHDRERRK 480 EEERLLRERQ REEERFQREQ RREHERMEKF LQKQSRRAEK QRQKEELRKE KEMARQKAAN 540 ERAT

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MDAGGGGDGP PREAPEERTP QTPAPPAPAS ASGGAAGPSG SGEKPVKRMM KTPYQLDVLE  60
QTYLAEQYPS EAMRAELSVK IGLSDRQLQM WFCHRRLKDR KPPAKRQRRD EEGPATPVPV  120
PPPVLPLQAM PLASTDLMMS AVSPYDEPLL PPTHSRRGAG RSSAVPRISA PDIGRRYYEP  180
LPVMLPPPVA PMHFRQAELR VITSVESQLG EPLREDGPLL GVDFDPLPPG AFGAPIVPEQ  240
QKQPARSYDT KIFSRHDPNL LKVSSFLPSM EHPFVPNSFA GKRKSTVGNP PLVHPHGGLR  300
AVHEYQFLPE QPSDAYERAS RSHYYDTLVE GSNSRIPSLT PVPHLLHGSE EMAPSYAFEG  360
QGLLPQSGRP QVFPAVSSDY EMNQSNSNIN SVPVDGQFGS SHVAGFEDPL ISSETRAYHD  420
EDASRVDRKR KHNEEAKIAK EVEAHEKRIR KELEKQDILR RKREEQMRKE MERHDRERRK  480
EEERLLRERQ REEERFQREQ RREHERMEKF LQKQSRRAEK QRQKEELRKE KEMARQKAAN  540
ERAT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_62571.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020165782.1	0.0	homeobox-DDT domain protein RLT2-like isoform X1
TrEMBL	A0A287LA00	0.0	A0A287LA00_HORVV; Uncharacterized protein
STRING	MLOC_62571.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	3e-56	Homeodomain-like transcriptional regulator