PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62589.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 449aa    MW: 49170 Da    PI: 6.6047
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62589.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.91.5e-109734322374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +lLl+cAeav+ ++l +a+ +L+++ elasp g++ +R+aayf  AL ar+++s  + y+ l++ +++     +  +a+++++ +sP++kfsh+ta
  MLOC_62589.1  73 LRLLLRCAEAVAMDQLPEARDMLQEVAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLAAAQSR-----RISSAFQAYNALSPLVKFSHFTA 164
                   689***************************************************999999988888877.....6788999**************** PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL. 194
                   N+aIl+a++ge++vH+iD+di+qGlQWp L++ LasRp+ p slR+Tg+g+    s + le+tg+rLa+fA++lg+pfef+++  k  +  ++ +L 
  MLOC_62589.1 165 NKAILQALDGEDHVHVIDLDIMQGLQWPGLFHMLASRPRRPLSLRVTGLGA----SLDVLEATGRRLADFAASLGLPFEFQPIEGKIGHVADTTALl 257
                   ***************************************************....9**************************855555555666664 PP

          GRAS 195 ...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                      + +++Ea++V++++  h l+d ++s       +++l+ksl+Pk++++veq++ h s++Fl rf+eal+yysalfd+l  ++++++eer+ vEr+
  MLOC_62589.1 258 gprHHHHREATVVHWMH--HCLYDVTGSDVG----TVRLLKSLRPKLMTIVEQDLGH-SGDFLGRFVEALHYYSALFDALRDSAGAAEEERHEVERQ 347
                   5444455*********9..889988999998....**********************.899*******************9999************* PP

          GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qa+ll+ +++++gy++ ee+g+l lgWkd +L+++S+W+
  MLOC_62589.1 348 LLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLAGSPAAQARLLIGMYPWKGYTLAEEDGCLKLGWKDLSLLTASSWE 432
                   ****************998887.9*************************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.95946412IPR005202Transcription factor GRAS
PfamPF035145.2E-10773432IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MIQGVLSRAP ATDAAMKAKR AASMPDDEEK ARGKRLQLHG SASEHEQGLL AVAAVEEGER  60
VVEAAETRGL RLLRLLLRCA EAVAMDQLPE ARDMLQEVAE LASPFGSSPE RVAAYFGDAL  120
CARVLSSYLG AYSPLAAAQS RRISSAFQAY NALSPLVKFS HFTANKAILQ ALDGEDHVHV  180
IDLDIMQGLQ WPGLFHMLAS RPRRPLSLRV TGLGASLDVL EATGRRLADF AASLGLPFEF  240
QPIEGKIGHV ADTTALLGPR HHHHREATVV HWMHHCLYDV TGSDVGTVRL LKSLRPKLMT  300
IVEQDLGHSG DFLGRFVEAL HYYSALFDAL RDSAGAAEEE RHEVERQLLG AEIRNIVAVG  360
GPKRTGEVRV ERWGDELRRA GFRPVSLAGS PAAQARLLIG MYPWKGYTLA EEDGCLKLGW  420
KDLSLLTASS WEPTEDCYVA VAEQKRHDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1527843324379Protein SCARECROW
5b3h_D1e-1527843324379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200232.10.0scarecrow-like protein 23 isoform X1
SwissprotQ9FHZ11e-160SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A287DV630.0A0A287DV63_HORVV; Uncharacterized protein
STRINGMLOC_62589.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137138122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-151GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]