PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_62589.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family GRAS
Protein Properties Length: 434aa    MW: 47687.3 Da    PI: 6.6046
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_62589.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.11.3e-109584172374
          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                    +lLl+cAeav+ ++l +a+ +L+++ elasp g++ +R+aayf  AL ar+++s  + y+ l++ +++     +  +a+++++ +sP++kfsh+ta
  MLOC_62589.4  58 LRLLLRCAEAVAMDQLPEARDMLQEVAELASPFGSSPERVAAYFGDALCARVLSSYLGAYSPLAAAQSR-----RISSAFQAYNALSPLVKFSHFTA 149
                   689***************************************************999999988888877.....6788999**************** PP

          GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL. 194
                   N+aIl+a++ge++vH+iD+di+qGlQWp L++ LasRp+ p slR+Tg+g+    s + le+tg+rLa+fA++lg+pfef+++  k  +  ++ +L 
  MLOC_62589.4 150 NKAILQALDGEDHVHVIDLDIMQGLQWPGLFHMLASRPRRPLSLRVTGLGA----SLDVLEATGRRLADFAASLGLPFEFQPIEGKIGHVADTTALl 242
                   ***************************************************....9**************************855555555666664 PP

          GRAS 195 ...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                      + +++Ea++V++++  h l+d ++s       +++l+ksl+Pk++++veq++ h s++Fl rf+eal+yysalfd+l  ++++++eer+ vEr+
  MLOC_62589.4 243 gprHHHHREATVVHWMH--HCLYDVTGSDVG----TVRLLKSLRPKLMTIVEQDLGH-SGDFLGRFVEALHYYSALFDALRDSAGAAEEERHEVERQ 332
                   5444455*********9..889988999998....**********************.899*******************9999************* PP

          GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                   llg ei+n+va  g +r+ + + +e+W + l++aGF+pv+l  + a+qa+ll+ +++++gy++ ee+g+l lgWkd +L+++S+W+
  MLOC_62589.4 333 LLGAEIRNIVAVGGPKRTGEVR-VERWGDELRRAGFRPVSLAGSPAAQARLLIGMYPWKGYTLAEEDGCLKLGWKDLSLLTASSWE 417
                   ****************998887.9*************************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.95931397IPR005202Transcription factor GRAS
PfamPF035144.6E-10758417IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MKAKRAASMP DDEEKARGKR LQLHGSASEH EQGLLAVAAV EEGERVVEAA ETRGLRLLRL  60
LLRCAEAVAM DQLPEARDML QEVAELASPF GSSPERVAAY FGDALCARVL SSYLGAYSPL  120
AAAQSRRISS AFQAYNALSP LVKFSHFTAN KAILQALDGE DHVHVIDLDI MQGLQWPGLF  180
HMLASRPRRP LSLRVTGLGA SLDVLEATGR RLADFAASLG LPFEFQPIEG KIGHVADTTA  240
LLGPRHHHHR EATVVHWMHH CLYDVTGSDV GTVRLLKSLR PKLMTIVEQD LGHSGDFLGR  300
FVEALHYYSA LFDALRDSAG AAEEERHEVE RQLLGAEIRN IVAVGGPKRT GEVRVERWGD  360
ELRRAGFRPV SLAGSPAAQA RLLIGMYPWK GYTLAEEDGC LKLGWKDLSL LTASSWEPTE  420
DCYVAVAEQK RHDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1536341824379Protein SCARECROW
5b3h_D1e-1536341824379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_62589.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038660.0AP003866.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1092_A07.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126150.0CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200232.10.0scarecrow-like protein 23 isoform X1
SwissprotQ9FHZ11e-160SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A287DV590.0A0A287DV59_HORVV; Uncharacterized protein
TrEMBLA0A287DV630.0A0A287DV63_HORVV; Uncharacterized protein
STRINGMLOC_62589.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-152GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]