PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_6267.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

C3H

Protein Properties

Length: 288aa MW: 32570.1 Da PI: 7.8804

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_6267.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.5	3.1e-10	46	68	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG Ck+ +C+F+H+ MLOC_6267.1 46 KECPYYMRTGSCKFATNCRFHHP 68 68********************9 PP
2	zf-CCCH	21.5	4.2e-07	191	217	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G+Ck+ +Ck++H++ MLOC_6267.1 191 PGEPECQHFVKSGFCKFKVKCKYHHPR 217 5799*********************96 PP
3	zf-CCCH	26.3	1.3e-08	238	263	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C ++ r+G Ck+G+ C ++H++ MLOC_6267.1 238 DQPMCTYYERYGVCKFGPACMYNHPF 263 6799********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.817	42	70	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8E-4	42	69	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	9.42E-6	44	69	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-7	46	68	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-4	48	67	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.554	190	218	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0034	190	217	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-4	192	217	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.76E-5	195	218	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.54	236	264	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.01	236	263	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	238	264	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-5	242	263	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MLIWFQNQNA CMGEPTIDKF RLYQHCCFLY WIFNANVVFL ILQGGKECPY YMRTGSCKFA 60 TNCRFHHPDP TNVVSRDPLL EHENGDIPQQ NVQASSQLNV PLWSADQRAL NEHRVPSLAP 120 APSYSAGMIP PRGMYPSSEW SGYHQVPLGP YYTPGISFHH FPAPPVNHPM YRGADVQGHQ 180 ELPSDEYPER PGEPECQHFV KSGFCKFKVK CKYHHPRSLV PPPTARALSP LGLPLRPDQP 240 MCTYYERYGV CKFGPACMYN HPFNFGHPVS AAGPPLSAQY LTSGNYPV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_6267.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK370517	0.0	AK370517.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2111P01.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179364.1	1e-168	zinc finger CCCH domain-containing protein 65-like isoform X1
Refseq	XP_020179366.1	1e-168	zinc finger CCCH domain-containing protein 65-like isoform X3
Refseq	XP_020179367.1	1e-168	zinc finger CCCH domain-containing protein 65-like isoform X4
Swissprot	Q2QTY2	1e-127	C3H65_ORYSJ; Zinc finger CCCH domain-containing protein 65
TrEMBL	A0A453K5V9	0.0	A0A453K5V9_AEGTS; Uncharacterized protein
STRING	MLOC_6267.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7928	35	48

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-45	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]