PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_62882.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

WOX

Protein Properties

Length: 143aa MW: 16315.4 Da PI: 7.8438

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_62882.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.5	5.6e-14	27	82	2	52
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrR 52 ++R+ +t+eql +L l+++ r+p+aee+ + +++l ++ ++V+ WFqN+ MLOC_62882.2 27 QPRWVPTREQLAVLDGLYRQgMRTPTAEEIHQVTARLqehgPIEGKNVFHWFQNQM 82 58***************99************99999**********85 PP
2	Wus_type_Homeobox	88.3	8e-29	27	87	3	63
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 ++RW Pt eQ+ +L+ ly++G+rtP++eei+++ta+L+e+G ie+kNVf+WFQN+ rq MLOC_62882.2 27 QPRWVPTREQLAVLDGLYRQGMRTPTAEEIHQVTARLQEHGPIEGKNVFHWFQNQMVQLRQ 87 78****************************************************9765554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.85E-10	19	92	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.73	23	88	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-11	27	82	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.8E-5	28	83	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MESIDHHDEA ATRLSLSPPH PSAPLSQPRW VPTREQLAVL DGLYRQGMRT PTAEEIHQVT 60 ARLQEHGPIE GKNVFHWFQN QMVQLRQMEK QQRSDYFARQ FRRPQPLPVL HSPPGHPFSP 120 FQLQAPPAPN TPACNGEGTY VLT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_62882.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	1e-142	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020175041.1	7e-82	WUSCHEL-related homeobox 5-like
Swissprot	A2WWU7	1e-34	WOX5_ORYSI; WUSCHEL-related homeobox 5
Swissprot	Q8LR86	1e-34	WOX5_ORYSJ; WUSCHEL-related homeobox 5
TrEMBL	M0XTJ6	2e-98	M0XTJ6_HORVV; Uncharacterized protein
STRING	MLOC_62882.1	4e-99	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59340.1	3e-25	WUSCHEL related homeobox 2