PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63032.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C2H2
Protein Properties Length: 183aa    MW: 19605 Da    PI: 9.0449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63032.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049111133123
                   EEETTTTEEESSHHHHHHHHHHT CS
       zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                   ++C++Cg  F     L  H+r+H
  MLOC_63032.1 111 HECHICGLGFEMGQALGGHMRRH 133
                   79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.99E-761133No hitNo description
PROSITE profilePS501579.936188IPR007087Zinc finger, C2H2
SMARTSM003550.966183IPR015880Zinc finger, C2H2-like
PfamPF139129.4E-106185IPR007087Zinc finger, C2H2
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
SMARTSM003550.49111133IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-10111136IPR007087Zinc finger, C2H2
PROSITE profilePS501579.827111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGVGMKRARE EEPVSLALAL TTDSAASSTT SADSAGGPAA AASRKRARRG RMVATSGEGE  60
FVCKTCSRAF ASFQALGGHR TSHLRGRHGL ELGVGVARAI RERKKQEERQ HECHICGLGF  120
EMGQALGGHM RRHREEMALR GGGGGGDDGD QWVWRSVGEP DQEVVGHRTA ANYQPPVLLE  180
LFV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3556320.0AK355632.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1023K12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198423.11e-113zinc finger protein ZAT8-like
TrEMBLF2CVH91e-128F2CVH9_HORVV; Predicted protein
STRINGMLOC_63032.11e-129(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130530117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46070.12e-19C2H2 family protein