PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63184.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family WRKY
Protein Properties Length: 318aa    MW: 33614.8 Da    PI: 10.0308
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63184.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.2e-31247305259
                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D ++WrKYGqK++kgs++pr+YY+C++  gCp++k+ver+ +dp+++++tYegeH+h+
  MLOC_63184.1 247 ADDFSWRKYGQKPIKGSPYPRGYYKCSTVrGCPARKHVERDPSDPSMLIVTYEGEHRHS 305
                   699***********************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-17195243IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.4E-32233305IPR003657WRKY domain
PROSITE profilePS5081130.389241307IPR003657WRKY domain
SuperFamilySSF1182904.71E-26244306IPR003657WRKY domain
SMARTSM007745.4E-37246306IPR003657WRKY domain
PfamPF031063.8E-26248304IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMTMDLIGGY GRADEQVAIQ EAAAAGLRGM EHLILQLSRT GTSESSPVGS SEAPEQGKQQ  60
VDCREITDMT VSKFKKVISI LNHRTGHARF RRGPVVAQSQ GPAVSEPAPV RASSSRSMTL  120
DFTKASSGYG NDPGFSVSAA SSSFMSSVTG DGSVSNGRGG GSSLMLPPPP SASCGKPPLA  180
SSVASTGAGA GAGQKRKCHD HAHSENVAGG KYGASGGRCH CSKRRKSRVR RMTRVPAISS  240
KAAEIPADDF SWRKYGQKPI KGSPYPRGYY KCSTVRGCPA RKHVERDPSD PSMLIVTYEG  300
EHRHSPADQE PLTPLQEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-20233304171WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000250|UniProtKB:Q0JEE2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00464DAPTransfer from AT4G31550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63184.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (By similarity) (PubMed:15618416). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (By similarity). Repressed by GA (PubMed:15618416). {ECO:0000250|UniProtKB:Q0JEE2, ECO:0000269|PubMed:15618416}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659470.0AK365947.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039E10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168943.10.0WRKY transcription factor WRKY51-like
SwissprotQ6IEN11e-158WRK51_ORYSI; WRKY transcription factor WRKY51
TrEMBLF2DPX90.0F2DPX9_HORVV; Predicted protein
STRINGMLOC_63184.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.14e-42WRKY DNA-binding protein 11