PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_6327.2

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

HB-other

Protein Properties

Length: 1086aa MW: 122036 Da PI: 7.3406

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_6327.2	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.7	4.7e-14	16	67	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR ke++ MLOC_6327.2 16 KKSPLQIQMLESFYSEVQYPKPEDVTEYAASVGLTHNQVRIWFKERRRKERR 67 66899*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	14.479	8	68	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.28E-13	10	75	IPR009057	Homeodomain-like
SMART	SM00389	1.6E-12	10	72	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.9E-14	15	76	IPR009057	Homeodomain-like
CDD	cd00086	1.50E-7	15	58	No hit	No description
Pfam	PF00046	2.1E-11	16	67	IPR001356	Homeobox domain
SMART	SM00571	0.0017	310	369	IPR018501	DDT domain
PROSITE profile	PS50827	10.183	310	369	IPR018501	DDT domain
Pfam	PF02791	4.2E-7	312	364	IPR018501	DDT domain
Pfam	PF15612	1.1E-5	588	619	IPR028942	WHIM1 domain
Pfam	PF15613	1.5E-10	711	782	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1086 aa Download sequence Send to blast
MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPKPEDV TEYAASVGLT HNQVRIWFKE 60 RRRKERRHME AAEVHMETQA SARSNWPRCS SSRSSNSSQS PMQDTTGHHS YQDQSVLKKR 120 KIMSPTARRS TLPFENNDPM RRHGKGKGLM TVWHAMYSQT AEIQDCSSFI DESGCLRSLR 180 PFEDCDRKLA QRQTLPRKKV NKKSRPPPSK RKVPCGRVTD LTEHPPVECH LSVDESESSE 240 LRTEQATLVD DEELELSELQ AGPNPLRCSA HLSSTGRHGC PLCKDLLARF PPPGVRMKQP 300 FPTKPWESSP EMVKKLFQVV RFVYTHFGSM DVHPFTFDEF AQAFHDKDSS LLGKVHVSLL 360 KLLMLNTERG SGSVFVPRSS KDSRFLSFLN FVREQEFDVN FWIKSLNSLT WVEILRQVLV 420 ASGFGSDHHI LNRNFFNKEK NQMVKYGLRP RTLKGELFEL LSKKGSGGLK VAELAKSPQI 480 IDLNLSGASE VEQLIFSTLS GDITLFEKIA PSAYRLRVDP RIKGKEDPRS DTEDSGTVDD 540 GGDASSSGDE SDGPQESYPE HESRIVRWKQ KNIHKNMNKC SEIDESYSGE RWLLGLMEGE 600 YSDLSIDEKL DCLVALIDVV SGAGSVPRLE EPQSVLSNIQ RAQSHASGGK IKKSTRTIYQ 660 SSDEYLNRPG SSHSFDSSMQ GQSGSLRGQD YIADSGANES PTRFAHQPQI VLLGSDRRYN 720 NYWLFLGPCR ADDPGHRRVY FESSEDGHWE VIDSPQDLLS LLSVLDIRGT REAHLLASMK 780 KRQSCLFEGM KKHLEDGCVV ALTASSDSSR SETSSGNRYS PKPSSGDGAS PLSDIDSASV 840 PTYLAGNLQN ASSAIGIEVG RRSDEKMSKW ERLQALDKWI WTSFYSSLTA VKCGKRSFKE 900 SLVHCESCHD LYWRDERHCR ICHSTFEVGF DLEERYAIHV ATCREPEDLY DVPNHKVLPS 960 QLQALKAAIH AIEARMPTAA FAGLWMKSSH NLWVKRLRRT SSLPELLQVL VDFVGAIDED 1020 WLYQSSSAVS FSSYLDDIIV YFQTMPQTTS AVALWVVKLD ALIAPHLAQA DSGRGLGKGS 1080 IETCLR

Sequence ? help Back to Top

Protein Sequence Length: 1086 aa Download sequence Send to blast

MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPKPEDV TEYAASVGLT HNQVRIWFKE  60
RRRKERRHME AAEVHMETQA SARSNWPRCS SSRSSNSSQS PMQDTTGHHS YQDQSVLKKR  120
KIMSPTARRS TLPFENNDPM RRHGKGKGLM TVWHAMYSQT AEIQDCSSFI DESGCLRSLR  180
PFEDCDRKLA QRQTLPRKKV NKKSRPPPSK RKVPCGRVTD LTEHPPVECH LSVDESESSE  240
LRTEQATLVD DEELELSELQ AGPNPLRCSA HLSSTGRHGC PLCKDLLARF PPPGVRMKQP  300
FPTKPWESSP EMVKKLFQVV RFVYTHFGSM DVHPFTFDEF AQAFHDKDSS LLGKVHVSLL  360
KLLMLNTERG SGSVFVPRSS KDSRFLSFLN FVREQEFDVN FWIKSLNSLT WVEILRQVLV  420
ASGFGSDHHI LNRNFFNKEK NQMVKYGLRP RTLKGELFEL LSKKGSGGLK VAELAKSPQI  480
IDLNLSGASE VEQLIFSTLS GDITLFEKIA PSAYRLRVDP RIKGKEDPRS DTEDSGTVDD  540
GGDASSSGDE SDGPQESYPE HESRIVRWKQ KNIHKNMNKC SEIDESYSGE RWLLGLMEGE  600
YSDLSIDEKL DCLVALIDVV SGAGSVPRLE EPQSVLSNIQ RAQSHASGGK IKKSTRTIYQ  660
SSDEYLNRPG SSHSFDSSMQ GQSGSLRGQD YIADSGANES PTRFAHQPQI VLLGSDRRYN  720
NYWLFLGPCR ADDPGHRRVY FESSEDGHWE VIDSPQDLLS LLSVLDIRGT REAHLLASMK  780
KRQSCLFEGM KKHLEDGCVV ALTASSDSSR SETSSGNRYS PKPSSGDGAS PLSDIDSASV  840
PTYLAGNLQN ASSAIGIEVG RRSDEKMSKW ERLQALDKWI WTSFYSSLTA VKCGKRSFKE  900
SLVHCESCHD LYWRDERHCR ICHSTFEVGF DLEERYAIHV ATCREPEDLY DVPNHKVLPS  960
QLQALKAAIH AIEARMPTAA FAGLWMKSSH NLWVKRLRRT SSLPELLQVL VDFVGAIDED  1020
WLYQSSSAVS FSSYLDDIIV YFQTMPQTTS AVALWVVKLD ALIAPHLAQA DSGRGLGKGS  1080
IETCLR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_6327.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK373981	0.0	AK373981.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3049P02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187489.1	0.0	homeobox-DDT domain protein RLT3-like
TrEMBL	A0A287HBL3	0.0	A0A287HBL3_HORVV; Uncharacterized protein
STRING	MLOC_6327.3	0.0	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-136	Homeodomain-like transcriptional regulator