PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63425.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 631aa    MW: 66070.4 Da    PI: 7.4795
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63425.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP245.42.1e-14294353155
           AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+A +a++ a++k++g
  MLOC_63425.1 294 SKYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDMEEKAGRAYDLAALKYWG 353
                   89*******************655454478446*************************98 PP
2AP239.71.3e-12398447355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GV++++++grW A+I  +s    +k  +lg+f  + +Aa+a++ a+ k++g
  MLOC_63425.1 398 YRGVTRHHQQGRWQARIGRVSG---NKDLYLGTFSAEADAAEAYDVAAIKFRG 447
                   9***************999754...5**********99************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.86E-19294362No hitNo description
PfamPF008471.5E-11294353IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-15294362IPR016177DNA-binding domain
SMARTSM003802.8E-26295367IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-14295362IPR001471AP2/ERF domain
PROSITE profilePS5103218.571295361IPR001471AP2/ERF domain
PRINTSPR003673.1E-6296307IPR001471AP2/ERF domain
CDDcd000183.70E-13396457No hitNo description
SuperFamilySSF541716.54E-16396457IPR016177DNA-binding domain
SMARTSM003801.2E-29397461IPR001471AP2/ERF domain
PROSITE profilePS5103218.162397455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.6E-17397455IPR001471AP2/ERF domain
PfamPF008472.2E-7398447IPR001471AP2/ERF domain
PRINTSPR003673.1E-6437457IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MTNGGHSMSG AGGWLGFSLS PQVAAAAMDA AAGSGIVDVA GHHHAHHGGV YYHPDPVASS  60
PMSFYFGGGD NVGAASGGYY SGISALPLRS DGSLCLADAL RRSEQKHHGA EVSAPPKLED  120
FLGAGPAMAL SLDNSGYYYG GHSHDNDGAG GGQQPLLYAM MPGSGGHHMY YDAHAALLDE  180
QAAATSAAME AAGWMARDGD VYDVDAGNGE EGGGAIVPAG PGNPGGYAHP LTLSISSGSQ  240
SSCVTVQQAA AQAHAYVGQA TAASKKRGAG AGAKQNKQPV VHRKCIDTFG QRTSKYRGVT  300
RHRWTGRYEA HLWDNSCRKE GQTRKGRQVY LGGYDMEEKA GRAYDLAALK YWGASTHINF  360
PVEDYQEELE VMKNMTRLEY VAHIRRKSSG FSRGASMYRG VTRHHQQGRW QARIGRVSGN  420
KDLYLGTFSA EADAAEAYDV AAIKFRGVSA VTNFEISRYD VDKIMESSTL LPADQVRRRK  480
DGPDALVASA AAALVQAGGA ADYWRQPVAA ASAVTPCGDK QSRHHLDLMS SESLSLLRGV  540
VSMDGDAAGA HGMGNSSSAR MSGASSLATS LSNSREQSPD QGGGLAMLFA RPAVPKLASS  600
LPMGSWVSSP TPARPGVSVA HMSVFAAWAD A
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63425.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753180.0AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156625.10.0AP2-like ethylene-responsive transcription factor PLT2
SwissprotQ84Z021e-153CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLM0XVI10.0M0XVI1_HORVV; Uncharacterized protein
STRINGMLOC_63425.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-107AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]