PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63425.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family AP2
Protein Properties Length: 147aa    MW: 16727.8 Da    PI: 9.5273
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63425.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.91.2e-1363112355
           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GV++++++grW A+I  +s    +k  +lg+f  + +Aa+a++ a+ k++g
  MLOC_63425.2  63 YRGVTRHHQQGRWQARIGRVSG---NKDLYLGTFSAEADAAEAYDVAAIKFRG 112
                   9***************999754...5**********99************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-5227IPR001471AP2/ERF domain
CDDcd000181.68E-1461122No hitNo description
SuperFamilySSF541715.04E-1761122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.4E-1862120IPR001471AP2/ERF domain
PROSITE profilePS5103218.16262120IPR001471AP2/ERF domain
SMARTSM003801.2E-2962126IPR001471AP2/ERF domain
PRINTSPR003672.6E-56374IPR001471AP2/ERF domain
PfamPF008472.1E-863112IPR001471AP2/ERF domain
PRINTSPR003672.6E-5102122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEEKAGRAYD LAALKYWGAS THINFPVEDY QEELEVMKNM TRLEYVAHIR RKSSGFSRGA  60
SMYRGVTRHH QQGRWQARIG RVSGNKDLYL GTFSAEADAA EAYDVAAIKF RGVSAVTNFE  120
ISRYDVDKIM ESSTLLPADQ VRRRKDG
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63425.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753180.0AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346556.12e-87uncharacterized protein LOC100217129
RefseqXP_008665715.12e-87putative AP2/EREBP transcription factor superfamily protein isoform X2
RefseqXP_015694507.13e-88PREDICTED: LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z029e-86CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A287SGD91e-100A0A287SGD9_HORVV; Uncharacterized protein
TrEMBLM0XVI11e-99M0XVI1_HORVV; Uncharacterized protein
STRINGMLOC_63425.11e-100(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.13e-71AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]