PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63532.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family HSF
Protein Properties Length: 235aa    MW: 26070.6 Da    PI: 7.6021
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63532.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind100.81.2e-31191112103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k++++++d++++ ++ w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ +          weF+h+sF +g+ +ll  i 
  MLOC_63532.1  19 FVAKTFHMVSDPATDAVVCWGGASNTFLVLDPAAFSDYLLPSYFKHRNFASFVRQLNTYGFRKVDPDM---------WEFAHESFLRGQAKLLPLIV 106
                   9********************999****************************************9988.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rkk++
  MLOC_63532.1 107 RKKKR 111
                   *9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.107.0E-3510102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-4715108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.9E-3115108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.6E-2819108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-171942IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-175769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.9E-177082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGSECKGHQH QDDGGVAPFV AKTFHMVSDP ATDAVVCWGG ASNTFLVLDP AAFSDYLLPS  60
YFKHRNFASF VRQLNTYGFR KVDPDMWEFA HESFLRGQAK LLPLIVRKKK RAGAGAAGRE  120
VCEEEEEEVR GTIQAVQRLR DERRGMEEEL QAMDRRLRAA ENRPGQMMAF LGKLADDPGV  180
VLRAMVAKKE ELAAAGAGGM DPRPDKRRRI GAEAEEAAQS RAVPFPFSNA GHVFY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-261410815120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205209KRRRI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63532.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3538490.0AK353849.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1003D09.
GenBankAK3705380.0AK370538.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2112D03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179067.11e-146heat stress transcription factor C-1b-like
SwissprotQ942D61e-125HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLF2CQE71e-172F2CQE7_HORVV; Predicted protein
STRINGMLOC_63532.11e-173(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-56heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]