PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63834.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 395aa    MW: 42495.6 Da    PI: 7.3826
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63834.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-19142192256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  MLOC_63834.1 142 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 192
                   59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-31141200No hitNo description
Gene3DG3DSA:3.30.730.104.2E-32142200IPR001471AP2/ERF domain
SMARTSM003802.5E-38142205IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-23142201IPR016177DNA-binding domain
PROSITE profilePS5103222.998142199IPR001471AP2/ERF domain
PfamPF008472.2E-12143192IPR001471AP2/ERF domain
PRINTSPR003676.4E-11143154IPR001471AP2/ERF domain
PRINTSPR003676.4E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDASSASGES GSGGGRGTGR RWKGKGVTPS ARHIFPFAYE PSATTARESP QLLRQYSSMS  60
QPAASSPQQQ PPLRHQQMIS FGGSPPCATH SFFMPAESAQ QQQHLVRYWS EALNLSPRGG  120
LAGMPPSLYQ QLLRAPPPPQ KLYRGVRQRH WGKWVAEIRL PRNRTRLWLG TFDTAEDAAM  180
AYDREAFKLR GENARLNFPD RFLGKGRAGG SGRTSAASSA VTSVATGTGT ASCSSSSSSP  240
PQTSDEAAAN TQQAPRQREQ QHAEEWSTLG NQPQHPPPTT IPQDGGSRDA ATPYSAEMFH  300
SSAPSGGMWV QADESWFNAW GPGSSFWDYE MDDSARGLFI HHPRFSGDDA GMSHSGAQET  360
PPATAAAGTS DTPCDDVLVT SSAPPPETYQ APNFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-20141201465ATERF1
3gcc_A4e-20141201465ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63834.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679870.0AK367987.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065O24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146908.10.0uncharacterized protein LOC109732119
TrEMBLF2DVR90.0F2DVR9_HORVV; Predicted protein
STRINGMLOC_63834.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.12e-38ERF family protein