PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63834.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ERF
Protein Properties Length: 458aa    MW: 49148.1 Da    PI: 9.0733
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63834.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19205255256
           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  MLOC_63834.2 205 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 255
                   59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.30E-31204263No hitNo description
SMARTSM003802.5E-38205268IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-23205264IPR016177DNA-binding domain
PROSITE profilePS5103222.998205262IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-32205263IPR001471AP2/ERF domain
PRINTSPR003678.2E-11206217IPR001471AP2/ERF domain
PfamPF008472.7E-12206255IPR001471AP2/ERF domain
PRINTSPR003678.2E-11228244IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MDASSASGES GSGGGRGTGR RWKGKGVTPI QARRQQLLAP VFEDASAALL RPLRKIGRSP  60
DRLHRTTSSL STSSSSAPAS PRSFPASDAA APSARHIFPF AYEPSATTAR ESPQLLRQYS  120
SMSQPAASSP QQQPPLRHQQ MISFGGSPPC ATHSFFMPAE SAQQQQHLVR YWSEALNLSP  180
RGGLAGMPPS LYQQLLRAPP PPQKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAED  240
AAMAYDREAF KLRGENARLN FPDRFLGKGR AGGSGRTSAA SSAVTSVATG TGTASCSSSS  300
SSPPQTSDEA AANTQQAPRQ REQQHAEEWS TLGNQPQHPP PTTIPQDGGS RDAATPYSAE  360
MFHSSAPSGG MWVQADESWF NAWGPGSSFW DYEMDDSARG LFIHHPRFSG DDAGMSHSGA  420
QETPPATAAA GTSDTPCDDV LVTSSAPPPE TYQAPNFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-20204264465ATERF1
3gcc_A5e-20204264465ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00458DAPTransfer from AT4G28140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63834.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679870.0AK367987.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065O24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146908.10.0uncharacterized protein LOC109732119
TrEMBLF2DVR90.0F2DVR9_HORVV; Predicted protein
STRINGMLOC_63834.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28140.16e-38ERF family protein