PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63870.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 320aa    MW: 36023.9 Da    PI: 8.2917
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63870.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.3e-07427226
                  -S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                  k++lC+ff+  G C  G+ C F+H+
  MLOC_63870.5  4 KRVLCKFFMH-GACLKGEYCEFSHD 27
                  89****8888.*************5 PP
2zf-CCCH28.82.2e-093555526
                  --SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                   C f++r G C+yG+rC++ H+
  MLOC_63870.5 35 VCTFYQR-GSCSYGSRCRYDHV 55
                  5999999.*************7 PP
3zf-CCCH21.44.5e-07165187326
                   S---SGGGGTS--TTTTT-SS-SS CS
       zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                   +++C+ fa+ G C+yG+ C+ +Hg
  MLOC_63870.5 165 MPICS-FAAAGNCPYGEECPHMHG 187
                   68999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156631.0E-7161No hitNo description
PROSITE profilePS5010314.22229IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-7327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8493057IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-53154IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-43256IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-43554IPR000571Zinc finger, CCCH-type
SMARTSM003560.0068162188IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.737162189IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-4165187IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4168187IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.99E-10220295No hitNo description
Gene3DG3DSA:3.30.40.107.5E-10224290IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001628.75E-4230290No hitNo description
PfamPF136392.8E-7230289IPR001841Zinc finger, RING-type
SMARTSM001842.9E-7231288IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.297231289IPR001841Zinc finger, RING-type
PROSITE patternPS005180255264IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSTKRVLCKF FMHGACLKGE YCEFSHDWSD QSNNVCTFYQ RGSCSYGSRC RYDHVKVSRN  60
NPVPPLPSSS AATRNPVRPP PSSSTATHVA STSLQLLSSG RPLHPGHQTN SSNQRQQISM  120
DKLSLSESKP AWRNEVQPDS VSEDGIDWSS IQTAQNQTSM KLADMPICSF AAAGNCPYGE  180
ECPHMHGDLC AFCGKMCLHP YRPDERQEHI KLCEKNHKRL EALKRSQEIE CSVCLDRVLS  240
KPTAAERKFG LLSECDHPFC ISCIRNWRGN SPTSGMDVNS ALRACPICRK LSYYVIPSVL  300
WYFSKEEKLE ITENYKAKLK
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63870.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2481880.0AK248188.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf156g01, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148368.10.0E3 ubiquitin-protein ligase makorin-like isoform X1
RefseqXP_020148370.10.0E3 ubiquitin-protein ligase makorin-like isoform X2
RefseqXP_020148371.10.0E3 ubiquitin-protein ligase makorin-like isoform X3
SwissprotQ5ZA070.0C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A287WBU80.0A0A287WBU8_HORVV; Uncharacterized protein
TrEMBLA0A287WBW80.0A0A287WBW8_HORVV; Uncharacterized protein
STRINGMLOC_63870.40.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-110C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]