PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63938.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 891aa    MW: 98194.8 Da    PI: 6.1505
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63938.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.52.5e-23131231198
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  MLOC_63938.1 131 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNDNNQ 224
                   99******************************9999996.9************************************************..676777 PP

                   .EEEEE- CS
            B3  92 lvvkvfr 98 
                   l+++++ 
  MLOC_63938.1 225 LLLGIRH 231
                   7888875 PP
2Auxin_resp116.22.8e-38257340183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                   aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+ rWpnS+Wrs+k
  MLOC_63938.1 257 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSARWPNSHWRSVK 340
                   79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.37E-48118260IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.3E-41122246IPR015300DNA-binding pseudobarrel domain
CDDcd100176.96E-22130223No hitNo description
PfamPF023622.0E-21131231IPR003340B3 DNA binding domain
PROSITE profilePS5086312.111131233IPR003340B3 DNA binding domain
SMARTSM010194.5E-23131233IPR003340B3 DNA binding domain
PfamPF065072.1E-33257340IPR010525Auxin response factor
PfamPF023097.2E-8754841IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-6756833No hitNo description
PROSITE profilePS5174523.455757841IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 891 aa     Download sequence    Send to blast
MERKLSMSEM PQPLPENDGE QRCLNSELWH ACAGPLVSLP AVGSRVIYFP QGHSEQVAAS  60
TNKEVDAQIP NYPNLPPQLI CQLHNVTMHA DAETDEVYAQ MTLQPLSPEE QKEPFLPIEL  120
GAASKQPTNY FCKTLTASDT STHGGFSVPR RSAEKVFPPL DFSLQPPCQE LIAKDLHDNE  180
WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVIFIWN DNNQLLLGIR HANRPQTVMP  240
SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF IIPLAKYVKS VYHTRVSVGM  300
RFRMLFETEE SSVRRYMGTI TTISDLDSAR WPNSHWRSVK VGWDESTAGE KQPRVSLWEI  360
EPLTTFPMYP TAFPLRLKRP WASGLPSMHG MFNGVKNDDF ARYSSLMWLG DGDRGAQSLN  420
FQGVGASPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRTG DPSKQSSALL QFQQTQNPNG  480
GLNSVYANHV LQQMQYQAQQ SSLQTVQHGH SQYSGNPGFL QSQFQQLHLH NPPAPSQQGH  540
QVIQQSHQEM QQQLSSGCHR ISDVDSSMSG SESASQSQPP FYQQNLLEGN NDPSMHLHNG  600
FRNFSSQDAS NLVSLPRTDQ LMAPEGWPSK RLAVEPLGHI ESRSVQPKHE NVNHQSNISH  660
FAGTLAPQSA RDSSSVQAYV ANVDNHFLSS SFAFQDGMAG ARGGSSSGTV SMAIPLLRYS  720
GEDLPPADTL ATSSCLGESG TFNSLDNMCG VDPSQDGIFV KVCKSGSPGR SLDITKFSSY  780
YELRSELEHL FGLEGQLEDP VRSGWQLVFV DRENDILLVG DDPWQEFVNS VGCIKILSPQ  840
EVQRMVRGGE GLLSSAPGAR MAQGDVCDGY SGGHDLQNLT GSMASVPSLD Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1592436151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63938.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3688220.0AK368822.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2080I14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168308.10.0auxin response factor 25-like isoform X2
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLF2DY540.0F2DY54_HORVV; Auxin response factor
STRINGMLOC_63938.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S, et al.
    CYTOKININ OXIDASE/DEHYDROGENASE4 Integrates Cytokinin and Auxin Signaling to Control Rice Crown Root Formation.
    Plant Physiol., 2014. 165(3): p. 1035-1046
    [PMID:24808099]