PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_63969.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 320aa    MW: 33441.4 Da    PI: 8.2126
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_63969.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.9e-05176221454
                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   + n+r r R +r+ +++  L++l+ +      +K + a++L +A  YI+ L
  MLOC_63969.3 176 TTNKRPRARKERLGERILALQQLVSPF-----GKTDTASVLHEALGYIRFL 221
                   679***********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.627172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-12175234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-7177230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.38E-5178226No hitNo description
SMARTSM003539.2E-4178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVKEEEVMAE ATGGGGRGYM DMLGLGEEAM ADYFLCLSPS TSSYLSSAAA STTTTTSASA  60
HTVASPTCAS YLHPPPAAPY HHVLSFGGRA EQQYHGGGDI FGFQYYYGAG GPAATVAAPQ  120
KSSPTTDCSS SISSMSSSPT ATAVSAISTS KPQPTKKRGS RGSSDQRKAA PPAASTTNKR  180
PRARKERLGE RILALQQLVS PFGKTDTASV LHEALGYIRF LHDQVQVLSS PYMQRLPPPP  240
SSAPPARPTT EEPRDLRSRG LCLVPVSCTD HVAGGGGNGA DVWSSVPAMG LPKAETVEEY  300
AVAAGMLRGD RDHPPTRQLA
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_63969.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751260.0AK375126.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3085P12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194103.11e-166transcription factor bHLH113-like
RefseqXP_020194104.11e-166transcription factor bHLH113-like
TrEMBLF2EG490.0F2EG49_HORVV; Predicted protein
STRINGMLOC_63969.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80822529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-36bHLH family protein