PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64012.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family CPP
Protein Properties Length: 144aa    MW: 16085.7 Da    PI: 9.7173
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64012.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.57.4e-1565104242
           TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                   +kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C Nk e+
  MLOC_64012.2  65 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNKVEN 104
                   689*************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.8E-1364104IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163418.42465144IPR005172CRC domain
PfamPF036382.0E-1166101IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEPGNQQQVQ PPAPPAAQLM APPHPPQPRP VAQVHAVFSS TRQWPMSFTP IKPMVEIKSV  60
TPPKRKKQCN CKNSHCLKLY CECFAAGLYC DGCNCKQCGN KVENEHARQE AINSTKLRNP  120
KAFQPKIENV PSTLSVRKVH SFLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64012.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227668.13e-64protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_014753297.12e-64protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBLA0A287X2X11e-95A0A287X2X1_HORVV; Uncharacterized protein
STRINGMLOC_64012.19e-96(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20110.12e-28Tesmin/TSO1-like CXC domain-containing protein