PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64018.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 159aa    MW: 17403.9 Da    PI: 5.1641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64018.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.60.000123322255
                  HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   L++l+P +    +k   Ka++L + ++Y++sLq
  MLOC_64018.2  3 HLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 32
                  79******9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-10148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.87131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-9247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.81E-4436No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKHLQDLVPG CNKITGKAMM LDEIINYVQS LQRQVEFLSM KLSAVSPELN CDLDLQDILC  60
PQDARSAFPG YGQRLGNVHP NGSMFRASQP GLSRPELYGN GIIIPDPASV HHMARTAQLP  120
AFPQRSIVWD EELRGIGPVA FPADAGTSSL ENSDSMKVE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64018.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159228.12e-96transcription factor bHLH137-like isoform X1
RefseqXP_020159234.11e-96transcription factor bHLH137-like isoform X2
SwissprotQ9C6701e-22BH076_ARATH; Transcription factor bHLH76
TrEMBLM0XXT51e-114M0XXT5_HORVV; Uncharacterized protein
STRINGMLOC_64018.11e-115(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26260.32e-25cryptochrome-interacting basic-helix-loop-helix 5
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]