PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64242.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family LSD
Protein Properties Length: 223aa    MW: 23424.3 Da    PI: 8.3894
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64242.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.16e-135175125
       zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                  C+gCr +L YPrGApsV+Ca+C++V
  MLOC_64242.2 51 CHGCRSVLLYPRGAPSVCCAVCHAV 75
                  ************************9 PP
2zf-LSD142.21.3e-1390114125
       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                   C gCrtlL+Y+r+A+ VRC++CdtV
  MLOC_64242.2  90 CVGCRTLLMYTRNATTVRCSCCDTV 114
                   ************************9 PP
3zf-LSD148.51.4e-15131155125
       zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                   Cg+C+t+L+YP+GA+sV+Ca+C+++
  MLOC_64242.2 131 CGQCQTVLMYPYGASSVKCAICNFI 155
                   ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.2E-124876IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-105175IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.8E-1387116IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-1090114IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.1E-12128157IPR005735Zinc finger, LSD1-type
PfamPF069437.2E-14131155IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MEQGADTRWA IGFGWSSGQS VIGLVCEKLS VLPRPDGPGR IFAGMQSQIV CHGCRSVLLY  60
PRGAPSVCCA VCHAVTSAPP PGMEMAQLIC VGCRTLLMYT RNATTVRCSC CDTVNLARPA  120
PPVNSIAHVN CGQCQTVLMY PYGASSVKCA ICNFITNIGM NTMRPLPATM HAPNGISYSV  180
PSTSAPSTQS QNVTVVVENP MTVDDKGKLV SNVVVGVTTG GKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64242.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3595790.0AK359579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1099G04.
GenBankEU5452330.0EU545233.1 Hordeum vulgare subsp. vulgare clone CEa0008p08 LSD1-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198652.11e-124protein LOL2-like
SwissprotQ2QMB31e-101LOL2_ORYSJ; Protein LOL2
TrEMBLA0A3B6KCJ11e-130A0A3B6KCJ1_WHEAT; Uncharacterized protein
TrEMBLA0A446SPM21e-130A0A446SPM2_TRITD; Uncharacterized protein
STRINGMLOC_64242.21e-163(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.14e-53lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]