PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64390.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 252aa    MW: 26702 Da    PI: 9.6519
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64390.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.35.8e-1368114354
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   r+h+e+ErrRR+riN  +++Lr+++P        K++Ka+ L ++++++k+L
  MLOC_64390.1  68 RSHSEAERRRRERINAHLATLRSMVPCT-----HKMDKAALLAEVINHVKKL 114
                   68*************************7.....5****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.02565114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-1068114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1468117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1468117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1271120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.22E-478115No hitNo description
Gene3DG3DSA:3.30.1150.106.0E-4162224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MNSGPFSGAV GLYDGFYGGF VGGHEHEHEH EHGFSQRLGA STSGEPGAAD VQKRKGGGRE  60
EKAATALRSH SEAERRRRER INAHLATLRS MVPCTHKMDK AALLAEVINH VKKLKSDAAR  120
VGKHCPVPSG ADEVTVEVVQ QSQASPHHLV VKATLSCGDG CADLFADVRR ALQPLAPRVV  180
GSEVTTLGGR VRITVAMSRE GAVTAASVRQ ALDSVLDKVA SAAAAFEFSP RDSLLASKRR  240
RVSTFDSSSS SS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378ERRRRE
2237241KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-149HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189852.11e-123transcription factor bHLH30-like
TrEMBLM0XZ930.0M0XZ93_HORVV; Uncharacterized protein
STRINGMLOC_64390.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.14e-28bHLH family protein