PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_64446.1

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

WRKY

Protein Properties

Length: 488aa MW: 51135.8 Da PI: 6.1867

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_64446.1	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.6	3.9e-31	235	293	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++++itY++eHnh+ MLOC_64446.1 235 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPNMLVITYTSEHNHP 293 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-31	228	295	IPR003657	WRKY domain
PROSITE profile	PS50811	33.178	229	295	IPR003657	WRKY domain
SuperFamily	SSF118290	1.44E-26	232	295	IPR003657	WRKY domain
SMART	SM00774	1.5E-38	234	294	IPR003657	WRKY domain
Pfam	PF03106	4.5E-26	236	293	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009555	Biological Process	pollen development
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MCDYYLQRVE GDQQAGDLTD IVRAGGAMPA GSADPPSTAT EWLQLPTDPI LSPPPQSSSD 60 GAGPSGADAD AFGDPFSGLP DPFGTDYPSS SGSAAADFFD AVQNAMDVGM AKQVGFVGTT 120 GCGGGGTTAG AGGGFLDMRN HHMFPREMPM CGLSPRAMGP YALMGGGAAK LGVPMAGHGQ 180 TAGPCAFDSV AGLQMSSSPR GGGIKRRKNQ ARKVVCIPAP AAAVAGKTTG EVVPSDLWAW 240 RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRTDPN MLVITYTSEH NHPWPTQRNV 300 LAGSTRSHYA KNSSNTAAAS SKNSKNSSRT QHKPVVKAES KDLSATTQAV TSTTTTATTS 360 TGNNTSPMPV KEEAEMERRI GGETPATVGY YSDHLLQQMF SQSYRPMTPE EAGGYHHQDD 420 FFADLTELDS DPVSLIFSAE YMEARPDKEK AAAMDGVDSL FMTDWAPASA AAVTTSAGSS 480 FEQGGIGF

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MCDYYLQRVE GDQQAGDLTD IVRAGGAMPA GSADPPSTAT EWLQLPTDPI LSPPPQSSSD  60
GAGPSGADAD AFGDPFSGLP DPFGTDYPSS SGSAAADFFD AVQNAMDVGM AKQVGFVGTT  120
GCGGGGTTAG AGGGFLDMRN HHMFPREMPM CGLSPRAMGP YALMGGGAAK LGVPMAGHGQ  180
TAGPCAFDSV AGLQMSSSPR GGGIKRRKNQ ARKVVCIPAP AAAVAGKTTG EVVPSDLWAW  240
RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRTDPN MLVITYTSEH NHPWPTQRNV  300
LAGSTRSHYA KNSSNTAAAS SKNSKNSSRT QHKPVVKAES KDLSATTQAV TSTTTTATTS  360
TGNNTSPMPV KEEAEMERRI GGETPATVGY YSDHLLQQMF SQSYRPMTPE EAGGYHHQDD  420
FFADLTELDS DPVSLIFSAE YMEARPDKEK AAAMDGVDSL FMTDWAPASA AAVTTSAGSS  480
FEQGGIGF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-24	208	296	2	80	Disease resistance protein RRS1
5w3x_D	2e-24	208	296	2	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_64446.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK368994	0.0	AK368994.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2083H02.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020179949.1	0.0	probable WRKY transcription factor 35
Swissprot	O64747	8e-68	WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBL	F2DYM5	0.0	F2DYM5_HORVV; Predicted protein
STRING	MLOC_64446.1	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2592	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	8e-61	WRKY DNA-binding protein 35

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]