PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64596.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 500aa    MW: 55619.6 Da    PI: 7.2919
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64596.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.4e-185713099
                  ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
            B3 30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                  +++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +++el+v+v+r+
  MLOC_64596.4  5 PPC-QELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGENGELRVGVRRH 71
                  445.4999**********************************************..449999******96 PP
2Auxin_resp1003.2e-3396181183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvs...dldpvrWpnSkWrsLk 83 
                   a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k++ svGmRfkm+fe++++ err+sGt++g+    +++++ W +S W+sLk
  MLOC_64596.4  96 ASHAISTGTLFSVFYKPRTSQSEFVVSVNKYLEAKKQNTSVGMRFKMKFEGDEALERRFSGTIIGIGstpTMSTSPWADSDWKSLK 181
                   789*************************************************************997222578889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-26185IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0033172IPR003340B3 DNA binding domain
PROSITE profilePS5086312.294172IPR003340B3 DNA binding domain
SuperFamilySSF1019362.88E-25299IPR015300DNA-binding pseudobarrel domain
CDDcd100174.59E-15470No hitNo description
PfamPF023621.0E-15571IPR003340B3 DNA binding domain
PfamPF065071.7E-3196181IPR010525Auxin response factor
PfamPF023094.4E-13368469IPR033389AUX/IAA domain
PROSITE profilePS5174524.519378460IPR000270PB1 domain
SuperFamilySSF542771.24E-10381457No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MSQNPPCQEL VAKDLHGTEW HFRHIFRGQP RRHLLTTGWS VFVSSKRLVA GDAFIFLRGE  60
NGELRVGVRR HMRQVNNMPS SVISSHSMHL GVLATASHAI STGTLFSVFY KPRTSQSEFV  120
VSVNKYLEAK KQNTSVGMRF KMKFEGDEAL ERRFSGTIIG IGSTPTMSTS PWADSDWKSL  180
KVQWDEPSSI LRPDRVSPWE LEPLDAANPQ PPQPPLRNKR PRLPASPSVV PELAPKFGLW  240
KSPAEPSQTL SFSEPQQARG LFTNSRFSSS SNVAFNQFYW PARESREDSY AASTNKATVE  300
RKLEPATGGC RLFGIEIRSA VEETQPVVTV SGDGYDQTAA SVDVDSGELS QPSNINNSGA  360
QAASSERALL DTQTRQVRSC TKVIMTGMAV GRAVDLTKLY GYVDLHRKLE EMFDIQGELC  420
STLKKWQVVY ADEEDDMMLV GDDPWDEFCS MAKRIYIFTY EEAKQLAPKA TKLSRVNSSH  480
ESVAPQSGSD YPASFANADC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1161206155357Auxin response factor 1
4ldw_A1e-1161206155357Auxin response factor 1
4ldw_B1e-1161206155357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64596.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516660.0AK251666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf119n03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162394.10.0auxin response factor 9
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A287IIK10.0A0A287IIK1_HORVV; Auxin response factor
STRINGMLOC_64596.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]