PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64596.5
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family ARF
Protein Properties Length: 604aa    MW: 67143.7 Da    PI: 6.0179
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64596.5genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.5e-24128229199
                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                   f+k+lt sd++++g +++ +++aee+      ++++++ ++l+ +d++g +W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +++e
  MLOC_64596.5 128 FCKTLTASDTSTHGGFSVLRRHAEEClppldmSQNPPC-QELVAKDLHGTEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGENGE 221
                   99*****************************7556666.59************************************************..449999 PP

                   .EEEEE-S CS
            B3  92 lvvkvfrk 99 
                   l+v+v+r+
  MLOC_64596.5 222 LRVGVRRH 229
                   ******96 PP
2Auxin_resp99.64.3e-33254339183
    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvs...dldpvrWpnSkWrsLk 83 
                   a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k++ svGmRfkm+fe++++ err+sGt++g+    +++++ W +S W+sLk
  MLOC_64596.5 254 ASHAISTGTLFSVFYKPRTSQSEFVVSVNKYLEAKKQNTSVGMRFKMKFEGDEALERRFSGTIIGIGstpTMSTSPWADSDWKSLK 339
                   789*************************************************************997222578889********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019368.63E-45115257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-42126243IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-22126228No hitNo description
PROSITE profilePS5086311.758128230IPR003340B3 DNA binding domain
PfamPF023628.3E-22128229IPR003340B3 DNA binding domain
SMARTSM010191.8E-22128230IPR003340B3 DNA binding domain
PfamPF065072.3E-31254339IPR010525Auxin response factor
PROSITE profilePS5174520.517536604IPR000270PB1 domain
SuperFamilySSF542774.51E-7539604No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MAAAMHMPNP SAAGAPGIFS DALFRELWHA CAGPLITVPR QGERVYYFPQ GHMEQLEAST  60
NQQLDQYLPM FNLPSKILCS VVNVELRTEA DSDEVYAQIM LQPEAKQDEL TSLGPEPQEL  120
EKGTIHSFCK TLTASDTSTH GGFSVLRRHA EECLPPLDMS QNPPCQELVA KDLHGTEWHF  180
RHIFRGQPRR HLLTTGWSVF VSSKRLVAGD AFIFLRGENG ELRVGVRRHM RQVNNMPSSV  240
ISSHSMHLGV LATASHAIST GTLFSVFYKP RTSQSEFVVS VNKYLEAKKQ NTSVGMRFKM  300
KFEGDEALER RFSGTIIGIG STPTMSTSPW ADSDWKSLKV QWDEPSSILR PDRVSPWELE  360
PLDAANPQPP QPPLRNKRPR LPASPSVVPE LAPKFGLWKS PAEPSQTLSF SEPQQARGLF  420
TNSRFSSSSN VAFNQFYWPA RESREDSYAA STNKATVERK LEPATGGCRL FGIEIRSAVE  480
ETQPVVTVSG DGYDQTAASV DVDSGELSQP SNINNSGAQA ASSERALLDT QTRQVRSCTK  540
VIMTGMAVGR AVDLTKLYGY VDLHRKLEEM FDIQGELCST LKKWQVVYAD EEDDMMLVGD  600
DPWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.013641357Auxin response factor 1
4ldw_A0.013641357Auxin response factor 1
4ldw_B0.013641357Auxin response factor 1
4ldx_A0.013641357Auxin response factor 1
4ldx_B0.013641357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64596.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516660.0AK251666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf119n03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162394.10.0auxin response factor 9
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLA0A287IIK10.0A0A287IIK1_HORVV; Auxin response factor
STRINGMLOC_64596.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]