PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64612.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family Dof
Protein Properties Length: 284aa    MW: 29212.2 Da    PI: 7.6557
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64612.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.81.2e-383593361
        zf-Dof  3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                  +++++cprCds+ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k++
  MLOC_64612.1 35 QEEVRCPRCDSANTKFCYYNNYNLSQPRHFCKGCRRYWTKGGLLRNVPVGGGCRKPKRK 93
                  7889***************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074789.0E-283592IPR003851Zinc finger, Dof-type
PfamPF027012.4E-323692IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9473892IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104076IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MQEFQPIPGL TGRLFGGAAD RLAGLLRRGG EAAAQEEVRC PRCDSANTKF CYYNNYNLSQ  60
PRHFCKGCRR YWTKGGLLRN VPVGGGCRKP KRKAAASSSD VDKDGAGASG DAKNAHSGCS  120
AGSSSTTSAA SSASTNTVDV GAGAAAYSNG RSTPATGLCP ITFTADAPPL QPPAPMFADQ  180
AATFASLFGT PRPAFTFSAQ RKAEDDVAPA VTLTEQPSSA SSTADMAPFS ARSTGAATAS  240
QSDWPPATII DAGIFDLAGA VGSDTTSYWN TASWTDPDGN VYLP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00570DAPTransfer from AT5G60850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64612.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM0843520.0AM084352.1 Hordeum vulgare subsp. vulgare dof4 gene for dof zinc finger protein 4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159027.11e-165dof zinc finger protein DOF5.4-like
TrEMBLA5HWF30.0A5HWF3_HORVV; Dof zinc finger protein 4
STRINGMLOC_64612.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64963050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60850.16e-35OBF binding protein 4