PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64644.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 100aa    MW: 11854.6 Da    PI: 10.9215
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64644.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.41.1e-13118356128
           NAM  56 kew..yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                   ke   +fF++++ ++ + +    +t +gyW+  g   +v + ++++v  k+t+ fy+gr  +g++t W m ey+l
  MLOC_64644.1  11 KERlgFFFVRKQATAYN-NGCFYTTPAGYWRIRGPPSRVRE-GRRTVAFKTTMDFYRGRLLHGRRTPWSMFEYKL 83 
                   33334777776665544.44555789*************99.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100515.961100IPR003441NAC domain
SuperFamilySSF1019413.4E-131685IPR003441NAC domain
PfamPF023653.3E-61683IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 100 aa     Download sequence    Send to blast
MHAVDEEDGD KERLGFFFVR KQATAYNNGC FYTTPAGYWR IRGPPSRVRE GRRTVAFKTT  60
MDFYRGRLLH GRRTPWSMFE YKLNARLGDF RNLAQPLVRM
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64644.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195281.18e-55NAC domain-containing protein 92-like
TrEMBLM0Y0F21e-68M0Y0F2_HORVV; Uncharacterized protein
STRINGBRADI5G14950.11e-31(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-12NAC domain containing protein 28