PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64817.3
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 325aa    MW: 34450.9 Da    PI: 9.8124
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64817.3genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.6e-181964147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEd+ l ++v ++G ++W++I++ ++ gR++k+c++rw + 
     MLOC_64817.3 19 KGPWSPEEDDALQRLVGRHGARNWSLISKSIP-GRSGKSCRLRWCNQ 64
                     79******************************.***********985 PP
2Myb_DNA-binding51.91.8e-1673115347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T++Ed+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
     MLOC_64817.3  73 PFTPDEDDTILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 115
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.7161469IPR017930Myb domain
SuperFamilySSF466892.88E-3116112IPR009057Homeodomain-like
SMARTSM007171.0E-151867IPR001005SANT/Myb domain
PfamPF002491.4E-171964IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-252072IPR009057Homeodomain-like
CDDcd001674.62E-152163No hitNo description
SMARTSM007177.2E-1470118IPR001005SANT/Myb domain
PROSITE profilePS5129419.74771120IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-2373119IPR009057Homeodomain-like
CDDcd001673.80E-1173116No hitNo description
PfamPF002495.3E-1473115IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAACRGGGGG GGKDVDRIKG PWSPEEDDAL QRLVGRHGAR NWSLISKSIP GRSGKSCRLR  60
WCNQLSPQVE HRPFTPDEDD TILRAHARFG NKWATIARLL SGRTDNAIKN HWNSTLKRKY  120
SSSSSASASA SASPGDDAVD DDRRPLKRTS SDGYPGLCFS PGSPSGSDLS DSSHQSLPSV  180
MPSAASHQPH VYRPVARAGG VVVLPTATPQ PSPPSPPPPP PPPPPATSLS LSLSLPGLDA  240
PEPAPVAQPM PMPMPPPPVP APVQPAAAPQ MPPPSMPFHL QPPPPPQPRA AAPFNGEFLS  300
MMQEMIRIEV RNYMSGFHPR SPTSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-38181193104MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-38181193104C-Myb DNA-Binding Domain
1msf_C1e-38181193104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1412RGGGGGGGK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64817.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3552410.0AK355241.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1018A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146152.11e-161transcription factor MYB44-like
TrEMBLF2CUD90.0F2CUD9_HORVV; Predicted protein
STRINGTraes_5DL_92CBBE968.11e-160(Triticum aestivum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.11e-68myb domain protein 70