PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64817.4
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MYB
Protein Properties Length: 381aa    MW: 40271.6 Da    PI: 10.1063
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64817.4genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-1773118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd+ l ++v ++G ++W++I++ ++ gR++k+c++rw + 
     MLOC_64817.4  73 KGPWSPEEDDALQRLVGRHGARNWSLISKSIP-GRSGKSCRLRWCNQ 118
                      79******************************.***********985 PP
2Myb_DNA-binding51.62.2e-16127169347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T++Ed+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
     MLOC_64817.4 127 PFTPDEDDTILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 169
                      89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.71668123IPR017930Myb domain
SuperFamilySSF466893.74E-3170166IPR009057Homeodomain-like
SMARTSM007171.0E-1572121IPR001005SANT/Myb domain
PfamPF002491.7E-1773118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2574126IPR009057Homeodomain-like
CDDcd001678.57E-1575117No hitNo description
SMARTSM007177.2E-14124172IPR001005SANT/Myb domain
PROSITE profilePS5129419.747125174IPR017930Myb domain
CDDcd001675.69E-11127170No hitNo description
Gene3DG3DSA:1.10.10.607.7E-23127173IPR009057Homeodomain-like
PfamPF002496.7E-14127169IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010200Biological Processresponse to chitin
GO:0046686Biological Processresponse to cadmium ion
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MVATPRVPGP AVPTSPPSLP CWAGTRSPSP PVPGSGYYAH VHPSIDRSIY GRRVMAACRG  60
GGGGGGKDVD RIKGPWSPEE DDALQRLVGR HGARNWSLIS KSIPGRSGKS CRLRWCNQLS  120
PQVEHRPFTP DEDDTILRAH ARFGNKWATI ARLLSGRTDN AIKNHWNSTL KRKYSSSSSA  180
SASASASASP GDDAVDDDRR PLKRTSSDGY PGLCFSPGSP SGSDLSDSSH QSLPSVMPSA  240
ASHQPHVYRP VARAGGVVVL PTATPQPSPP SPPPPPPPPP PATSLSLSLS LPGLDAPEPA  300
PVAQPMPMPM PPPPVPAPVQ PAAAPQMPPP SMPFHLQPPP PPQPRAAAPF NGEFLSMMQE  360
MIRIEVRNYM SGFHPRSPTS A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-38701734107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15866RGGGGGGGK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00476DAPTransfer from AT4G37260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64817.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3552410.0AK355241.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1018A13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146152.11e-159transcription factor MYB44-like
TrEMBLA0A287R5W90.0A0A287R5W9_HORVV; Uncharacterized protein
STRINGMLOC_64817.11e-168(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.15e-69myb domain protein 70