PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_64819.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 24707.8 Da    PI: 5.9949
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_64819.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.21.6e-161059251
                  ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
        SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                  ri n+  r  tf kR +g+lKKA+EL vLCda+  v++f   g+ + y+s
  MLOC_64819.2 10 RIANNVSRRATFGKRCAGLLKKAHELAVLCDADLGVLVFDAAGRQFHYCS 59
                  899************************************99999888875 PP
2K-box53.97.9e-19861751199
         K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLes.LslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                   ++++ +l  e+a+L++e + L+   R   GedL s  s+ eL +Leq+Le++l k+R+ K++ll eq+ e+ ++ + l+++n  Lr+++ 
  MLOC_64819.2  86 NHDHDQLLSEIARLRQERDHLEAVVRSQTGEDLPStASVPELGHLEQKLERALGKVREMKDKLLEEQLGESHHRVHILEDQNSFLRHMMS 175
                   566788999************************652799***********************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.5E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.067161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-21375IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-20323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-171057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-202338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-203859IPR002100Transcription factor, MADS-box
PfamPF014861.2E-1887174IPR002487Transcription factor, K-box
PROSITE profilePS5129712.72189180IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MRRGSVEIRR IANNVSRRAT FGKRCAGLLK KAHELAVLCD ADLGVLVFDA AGRQFHYCSP  60
NASWSELIQR YDSTTSDQFQ GGQGMNHDHD QLLSEIARLR QERDHLEAVV RSQTGEDLPS  120
TASVPELGHL EQKLERALGK VREMKDKLLE EQLGESHHRV HILEDQNSFL RHMMSEEGRQ  180
RAAVEASAVV AELMAPATLL GGFFPEVEEE EAATSLRLWP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_64819.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3732260.0AK373226.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3024I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154090.12e-96MADS-box transcription factor 29-like
TrEMBLA0A287XRI41e-159A0A287XRI4_HORVV; Uncharacterized protein
TrEMBLF2EAQ11e-160F2EAQ1_HORVV; Predicted protein
STRINGMLOC_64819.21e-161(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1951846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.14e-31MIKC_MADS family protein