PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6489.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 154aa    MW: 16756 Da    PI: 9.0856
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6489.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-1184108126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +ktelC+ +   G C+yG+rC+FaHg
  MLOC_6489.1  84 KKTELCNKWEG-GACSYGSRCRFAHG 108
                  59*******98.*************9 PP
2zf-CCCH20.58.5e-07121147127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ykt +C+ fa+   C+yG rC+F H+p
  MLOC_6489.1 121 YKTLPCQMFAAASGCPYGHRCHFRHSP 147
                  9************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-1379115IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-783109IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.85983110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.18E-884113IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-884108IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-11116147IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-8117146IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4120147IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.831120148IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
ERAIAAAPTL PPKPTEGVAA RGGAPKSISI RSKCYLSQAK QPQGEAEAQR LHVRPPPSIE  60
QAGEDEAKGD GEVVELEAYR QGTKKTELCN KWEGGACSYG SRCRFAHGLQ DMRPVIRHPR  120
YKTLPCQMFA AASGCPYGHR CHFRHSPAPA AQSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A4e-18851481175Tristetraproline
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6489.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2348163e-69AJ234816.1 Hordeum vulgare genomic DNA fragment; clone MWG2163.rev.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199363.12e-92putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN83e-59C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A287P5141e-108A0A287P514_HORVV; Uncharacterized protein
STRINGMLOC_6489.11e-109(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP121433235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.18e-41C3H family protein