PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_6489.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 73aa    MW: 8184.38 Da    PI: 9.6966
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_6489.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.53.8e-12327126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 +ktelC+ +   G C+yG+rC+FaHg
  MLOC_6489.2  3 KKTELCNKWEG-GACSYGSRCRFAHG 27
                 59*******98.*************9 PP
2zf-CCCH22.42.2e-074066127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ykt +C+ fa+   C+yG rC+F H+p
  MLOC_6489.2 40 YKTLPCQMFAAASGCPYGHRCHFRHSP 66
                 9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.859229IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7228IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-9327IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.29E-8332IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-14433IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-123466IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-83665IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-43966IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8313967IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-44066IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
GTKKTELCNK WEGGACSYGS RCRFAHGLQD MRPVIRHPRY KTLPCQMFAA ASGCPYGHRC  60
HFRHSPAPAA QSY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1m9o_A9e-194671175Tristetraproline
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_6489.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1186681e-63AC118668.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence.
GenBankAC1372671e-63AC137267.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032G21, from chromosome 3, complete sequence.
GenBankAP0149591e-63AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-63CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199363.17e-46putative zinc finger CCCH domain-containing protein 21
SwissprotQ10MN84e-39C3H21_ORYSJ; Putative zinc finger CCCH domain-containing protein 21
TrEMBLA0A287P3T41e-48A0A287P3T4_HORVV; Uncharacterized protein
STRINGMLOC_6489.14e-49(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.22e-31C3H family protein