PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MLOC_64962.4

Organism

Hordeum vulgare

Taxonomic ID

4513

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum

Family

LSD

Protein Properties

Length: 54aa MW: 5858.66 Da PI: 8.512

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MLOC_64962.4	genome	IBSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	24.1	5.9e-08	22	44	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gC l Y rGA +VRC+ C+ MLOC_64962.4 22 CNGCFSLVLYNRGAANVRCSRCN 44 **********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	4.8E-8	20	47	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.3E-8	22	44	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 54 aa Download sequence Send to blast
MPRCTSSVNH QTETATMSEL ICNGCFSLVL YNRGAANVRC SRCNMLNSTR SGTA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	MLOC_64962.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK249896	2e-80	AK249896.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf55k22, mRNA sequence.
GenBank	AK353682	2e-80	AK353682.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1002A12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020167616.1	2e-27	protein LOL4-like
TrEMBL	A0A287WWF4	3e-31	A0A287WWF4_HORVV; Uncharacterized protein
STRING	MLOC_64962.3	4e-29	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	1e-07	LSD family protein