PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65318.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 327aa    MW: 35194.9 Da    PI: 5.2711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65318.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.84.6e-09274322355
                   HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  MLOC_65318.1 274 NSHSLAERVRREKISERMKFLQDLVPGC----SKVIGKAVMLDEIINYVQSLQ 322
                   58*************************9....566*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.58E-10269326No hitNo description
SuperFamilySSF474597.85E-15269326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.205271321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-15274326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-6274322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-9277327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
METNEKNAAE LEEKNQPSGH DQQPSFHGPG FSLSPEAQMD SSTSALAAMG NPFPPGLWNP  60
PGQNFGLGEA NTNAMLNGHQ FSSFLGMLSA ATPAYPGAPS GFMDCGTGFP GLSANSLGAM  120
MDHPFSRNPP MGSFQNDIET SREMNVDEGC KDALLTGDRQ QGDTESSHGV DASSKELSKP  180
ECSGGAGQDE GPSVSCPKKR KRPSQDRGVK NVQEGSQQLA TLAAKQEKDD GDKDEPKRPI  240
VTSRKSNGKQ TEDKSDAPKE DYIHIRARSG QATNSHSLAE RVRREKISER MKFLQDLVPG  300
CSKVIGKAVM LDEIINYVQS LQRQVEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196202PKKRKRP
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65318.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3691070.0AK369107.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2085G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151883.10.0transcription factor bHLH49-like
TrEMBLM0Y3B40.0M0Y3B4_HORVV; Uncharacterized protein
STRINGMLOC_65318.20.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.27e-47bHLH family protein