PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65327.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family C3H
Protein Properties Length: 647aa    MW: 71396.6 Da    PI: 5.047
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65327.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.96.4e-07118140427
                   ---SGGGGTS--TTTTT-SS-SSS CS
       zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                   ++C +f++ G C  G+ C+F+Hgp
  MLOC_65327.1 118 VPCYYFQK-GMCAKGNLCTFSHGP 140
                   79******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.00522452IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.7372453IPR000571Zinc finger, CCCH-type
PfamPF156631.0E-112579No hitNo description
PROSITE profilePS5010310.8685581IPR000571Zinc finger, CCCH-type
SMARTSM003562.85780IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.38114141IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4115140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.97E-5116139IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MDSAAAAAQS QATHAPADEE EARRRRGTDC IYYLASPLTC NKGSECEYRH SDAARVNPRD  60
CWYWFNGNCA NAKCSFRHPP LDDMLGAPAT PRAPQQPAPQ VPVPAKAVPP NGTAKPVVPC  120
YYFQKGMCAK GNLCTFSHGP QFAGNPALQL KNSNSWTKAN NSPQQSTTPV VHGELKAGAQ  180
NGRPAQKQNP TNRAYHSSGI YQNQNNNPYV LSGAAKSYQP HRSVEAESAE NVMETGEFVR  240
EPSAGSSVLA GSAEDDAERS IKEGHNSSYR RASGEQNSGV RRQAHGGYEL ERSSHRSSSD  300
RLVSERRLTQ RDSMPVTAES SDLRHRLLKQ RRLNDSRSTE VPDRRDRRYP EDERDSHLRR  360
RGEERTAHDS LSRSRLHGRI KLPGETSLDR LGPHPHLEKE RGHRDRLSPP KQTDLRAKLH  420
DRLKARSNED VPGNLKSSVV KAISGEDAGV VNFSGPKSLA ELRAKKVAYS SGENTVKNAD  480
RIARPARMTS EIVAKDSPDP VPFDGPKPLS VILKRKREAA SADSGSMQEE QVAGQVEQSL  540
NNSGILDTNT EDVEEEEEFH PEDDVMYDDD GLSPADDNTA EAAGDADKEE LEEGQQEDLE  600
TAAEEEYDYE AADDANAEGE NDYQEYEDDD DLEDDDDFAR KVGVLIS
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65327.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650990.0AK365099.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030O09.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201475.10.0zinc finger CCCH domain-containing protein 19-like
SwissprotQ6K9770.0C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBLM0Y3C80.0M0Y3C8_HORVV; Uncharacterized protein
STRINGMLOC_65327.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP130972123
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]