PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_65345.1
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family bHLH
Protein Properties Length: 232aa    MW: 25951.3 Da    PI: 7.1326
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_65345.1genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.6e-1261114155
                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
           HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                   r+++h++ Er  R+++N+ +++Lr+llP  +   + +Kls  +i+ ++++YI +Lq
  MLOC_65345.1  61 RKMSHSAYERDSRKQLNEHYSNLRSLLPDdD--HHIRKLSNPTIVSRVIKYIPELQ 114
                   799**************************66..79999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.29E-959117No hitNo description
SuperFamilySSF474598.77E-1459130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.93560113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.1E-1261129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-961114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-766119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEHQMFNDPF TSSMSSLEAD IFSGVHHHLA PSLQWPDLDH DIPAAPATNN APSSGGSGSQ  60
RKMSHSAYER DSRKQLNEHY SNLRSLLPDD DHHIRKLSNP TIVSRVIKYI PELQKEVDGL  120
EKKKEQLTRA SCRPGDDTAP IVSATCLDVR EVMVQVSLMS TMSGALPMSK CIKVLENQGL  180
CLISSSSSTF QNRTFYSLHL QRTQRTMNKE CSAFCDELEN AVKQKAGLHP HY
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMLOC_65345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-134HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193391.11e-150transcription factor bHLH100-like
SwissprotA2WZ601e-78IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLM0Y3F41e-173M0Y3F4_HORVV; Uncharacterized protein
STRINGMLOC_65345.11e-174(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-23bHLH family protein